Gene : Medtr1g017080 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11850:SF64 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 Description:  homeobox knotted-like protein
Genomic Order:  605 Name:  ? Medtr1g017080
Secondary Identifier:  ? PAC:31094539
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g017080 0.5kb upstream 0.5kb upstream 6700 true chr1: 4655688-4662387 Medicago truncatula
Medtr1g017080 0.5kb upstream 0.5kb upstream 500 false chr1: 4655688-4656187 Medicago truncatula
Medtr1g017080 0.5kb downstream 0.5kb downstream 6700 true chr1: 4656188-4662887 Medicago truncatula
Medtr1g017080 0.5kb downstream 0.5kb downstream 500 false chr1: 4662388-4662887 Medicago truncatula
Medtr1g017080 1.0kb upstream 1.0kb upstream 7200 true chr1: 4655188-4662387 Medicago truncatula
Medtr1g017080 1.0kb upstream 1.0kb upstream 1000 false chr1: 4655188-4656187 Medicago truncatula
Medtr1g017080 1.0kb downstream 1.0kb downstream 7200 true chr1: 4656188-4663387 Medicago truncatula
Medtr1g017080 1.0kb downstream 1.0kb downstream 1000 false chr1: 4662388-4663387 Medicago truncatula
Medtr1g017080 2.0kb upstream 2.0kb upstream 8200 true chr1: 4654188-4662387 Medicago truncatula
Medtr1g017080 2.0kb upstream 2.0kb upstream 2000 false chr1: 4654188-4656187 Medicago truncatula
Medtr1g017080 2.0kb downstream 2.0kb downstream 8200 true chr1: 4656188-4664387 Medicago truncatula
Medtr1g017080 2.0kb downstream 2.0kb downstream 2000 false chr1: 4662388-4664387 Medicago truncatula
Medtr1g017080 5.0kb upstream 5.0kb upstream 11200 true chr1: 4651188-4662387 Medicago truncatula
Medtr1g017080 5.0kb upstream 5.0kb upstream 5000 false chr1: 4651188-4656187 Medicago truncatula
Medtr1g017080 5.0kb downstream 5.0kb downstream 11200 true chr1: 4656188-4667387 Medicago truncatula
Medtr1g017080 5.0kb downstream 5.0kb downstream 5000 false chr1: 4662388-4667387 Medicago truncatula
Medtr1g017080 10.0kb upstream 10.0kb upstream 16200 true chr1: 4646188-4662387 Medicago truncatula
Medtr1g017080 10.0kb upstream 10.0kb upstream 10000 false chr1: 4646188-4656187 Medicago truncatula
Medtr1g017080 10.0kb downstream 10.0kb downstream 16200 true chr1: 4656188-4672387 Medicago truncatula
Medtr1g017080 10.0kb downstream 10.0kb downstream 10000 false chr1: 4662388-4672387 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301838 5265 Fabidae View MSA
124072037 5270 Rosid View MSA
123750536 5271 Pentapetalae View MSA
122794934 5272 Eudicot View MSA
122051072 5273 Angiosperm View MSA
121351483 5274 Embryophyte View MSA
123428758 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.256        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.256        
cufflinks 0.002     Low Low
cufflinks 0.065     Low  
cufflinks 0.115        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.061     Low  

0 Strain