Gene : Medtr1g055080 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR14732:SF0 - RNA POLYMERASE II SUBUNIT B1 CTD PHOSPHATASE RPAP2-RELATED Description:  RNA polymerase II subunit B1 CTD phosphatase RPAP2, putative
Genomic Order:  2956 Name:  ? Medtr1g055080
Secondary Identifier:  ? PAC:31099791
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g055080 0.5kb upstream 0.5kb upstream 4573 true chr1: 24255681-24260253 Medicago truncatula
Medtr1g055080 0.5kb upstream 0.5kb upstream 500 false chr1: 24255681-24256180 Medicago truncatula
Medtr1g055080 0.5kb downstream 0.5kb downstream 4573 true chr1: 24256181-24260753 Medicago truncatula
Medtr1g055080 0.5kb downstream 0.5kb downstream 500 false chr1: 24260254-24260753 Medicago truncatula
Medtr1g055080 1.0kb upstream 1.0kb upstream 5073 true chr1: 24255181-24260253 Medicago truncatula
Medtr1g055080 1.0kb upstream 1.0kb upstream 1000 false chr1: 24255181-24256180 Medicago truncatula
Medtr1g055080 1.0kb downstream 1.0kb downstream 5073 true chr1: 24256181-24261253 Medicago truncatula
Medtr1g055080 1.0kb downstream 1.0kb downstream 1000 false chr1: 24260254-24261253 Medicago truncatula
Medtr1g055080 2.0kb upstream 2.0kb upstream 6073 true chr1: 24254181-24260253 Medicago truncatula
Medtr1g055080 2.0kb upstream 2.0kb upstream 2000 false chr1: 24254181-24256180 Medicago truncatula
Medtr1g055080 2.0kb downstream 2.0kb downstream 6073 true chr1: 24256181-24262253 Medicago truncatula
Medtr1g055080 2.0kb downstream 2.0kb downstream 2000 false chr1: 24260254-24262253 Medicago truncatula
Medtr1g055080 5.0kb upstream 5.0kb upstream 9073 true chr1: 24251181-24260253 Medicago truncatula
Medtr1g055080 5.0kb upstream 5.0kb upstream 5000 false chr1: 24251181-24256180 Medicago truncatula
Medtr1g055080 5.0kb downstream 5.0kb downstream 9073 true chr1: 24256181-24265253 Medicago truncatula
Medtr1g055080 5.0kb downstream 5.0kb downstream 5000 false chr1: 24260254-24265253 Medicago truncatula
Medtr1g055080 10.0kb upstream 10.0kb upstream 14073 true chr1: 24246181-24260253 Medicago truncatula
Medtr1g055080 10.0kb upstream 10.0kb upstream 10000 false chr1: 24246181-24256180 Medicago truncatula
Medtr1g055080 10.0kb downstream 10.0kb downstream 14073 true chr1: 24256181-24270253 Medicago truncatula
Medtr1g055080 10.0kb downstream 10.0kb downstream 10000 false chr1: 24260254-24270253 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304896 5265 Fabidae View MSA
124069329 5270 Rosid View MSA
123741473 5271 Pentapetalae View MSA
122794606 5272 Eudicot View MSA
122046248 5273 Angiosperm View MSA
121347996 5274 Embryophyte View MSA
123426503 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.235     High High
cufflinks 10.832     High  
cufflinks 9.506        
cufflinks 4.428       Low
cufflinks 9.283        
cufflinks 4.869       Low
cufflinks 11.867     High  
cufflinks 12.066     High  
cufflinks 8.638        

0 Strain