Gene : Medtr1g056910 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR22849//PTHR22849:SF24 - WDSAM1 PROTEIN Description:  E3 ubiquitin-protein ligase PUB23-like protein
Genomic Order:  3030 Name:  ? Medtr1g056910
Secondary Identifier:  ? PAC:31099065
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g056910 0.5kb upstream 0.5kb upstream 1931 true chr1: 24920395-24922325 Medicago truncatula
Medtr1g056910 0.5kb upstream 0.5kb upstream 500 false chr1: 24921826-24922325 Medicago truncatula
Medtr1g056910 0.5kb downstream 0.5kb downstream 1931 true chr1: 24919895-24921825 Medicago truncatula
Medtr1g056910 0.5kb downstream 0.5kb downstream 500 false chr1: 24919895-24920394 Medicago truncatula
Medtr1g056910 1.0kb upstream 1.0kb upstream 2431 true chr1: 24920395-24922825 Medicago truncatula
Medtr1g056910 1.0kb upstream 1.0kb upstream 1000 false chr1: 24921826-24922825 Medicago truncatula
Medtr1g056910 1.0kb downstream 1.0kb downstream 2431 true chr1: 24919395-24921825 Medicago truncatula
Medtr1g056910 1.0kb downstream 1.0kb downstream 1000 false chr1: 24919395-24920394 Medicago truncatula
Medtr1g056910 2.0kb upstream 2.0kb upstream 3431 true chr1: 24920395-24923825 Medicago truncatula
Medtr1g056910 2.0kb upstream 2.0kb upstream 2000 false chr1: 24921826-24923825 Medicago truncatula
Medtr1g056910 2.0kb downstream 2.0kb downstream 3431 true chr1: 24918395-24921825 Medicago truncatula
Medtr1g056910 2.0kb downstream 2.0kb downstream 2000 false chr1: 24918395-24920394 Medicago truncatula
Medtr1g056910 5.0kb upstream 5.0kb upstream 6431 true chr1: 24920395-24926825 Medicago truncatula
Medtr1g056910 5.0kb upstream 5.0kb upstream 5000 false chr1: 24921826-24926825 Medicago truncatula
Medtr1g056910 5.0kb downstream 5.0kb downstream 6431 true chr1: 24915395-24921825 Medicago truncatula
Medtr1g056910 5.0kb downstream 5.0kb downstream 5000 false chr1: 24915395-24920394 Medicago truncatula
Medtr1g056910 10.0kb upstream 10.0kb upstream 11431 true chr1: 24920395-24931825 Medicago truncatula
Medtr1g056910 10.0kb upstream 10.0kb upstream 10000 false chr1: 24921826-24931825 Medicago truncatula
Medtr1g056910 10.0kb downstream 10.0kb downstream 11431 true chr1: 24910395-24921825 Medicago truncatula
Medtr1g056910 10.0kb downstream 10.0kb downstream 10000 false chr1: 24910395-24920394 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306710 5265 Fabidae View MSA
124070283 5270 Rosid View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.511        
cufflinks 0.558        
cufflinks 0.524        
cufflinks 1.305        
cufflinks 0.454        
cufflinks 4.172       High
cufflinks 4.791       High
cufflinks 0.476        
cufflinks 0.973        

0 Strain