Gene : Medtr1g057940 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR12300//PTHR12300:SF44 - HVA22-LIKE PROTEINS Description:  TB2/DP1, HVA22 family protein
Genomic Order:  3099 Name:  ? Medtr1g057940
Secondary Identifier:  ? PAC:31099854
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g057940 0.5kb upstream 0.5kb upstream 2958 true chr1: 25495866-25498823 Medicago truncatula
Medtr1g057940 0.5kb upstream 0.5kb upstream 500 false chr1: 25498324-25498823 Medicago truncatula
Medtr1g057940 0.5kb downstream 0.5kb downstream 2958 true chr1: 25495366-25498323 Medicago truncatula
Medtr1g057940 0.5kb downstream 0.5kb downstream 500 false chr1: 25495366-25495865 Medicago truncatula
Medtr1g057940 1.0kb upstream 1.0kb upstream 3458 true chr1: 25495866-25499323 Medicago truncatula
Medtr1g057940 1.0kb upstream 1.0kb upstream 1000 false chr1: 25498324-25499323 Medicago truncatula
Medtr1g057940 1.0kb downstream 1.0kb downstream 3458 true chr1: 25494866-25498323 Medicago truncatula
Medtr1g057940 1.0kb downstream 1.0kb downstream 1000 false chr1: 25494866-25495865 Medicago truncatula
Medtr1g057940 2.0kb upstream 2.0kb upstream 4458 true chr1: 25495866-25500323 Medicago truncatula
Medtr1g057940 2.0kb upstream 2.0kb upstream 2000 false chr1: 25498324-25500323 Medicago truncatula
Medtr1g057940 2.0kb downstream 2.0kb downstream 4458 true chr1: 25493866-25498323 Medicago truncatula
Medtr1g057940 2.0kb downstream 2.0kb downstream 2000 false chr1: 25493866-25495865 Medicago truncatula
Medtr1g057940 5.0kb upstream 5.0kb upstream 7458 true chr1: 25495866-25503323 Medicago truncatula
Medtr1g057940 5.0kb upstream 5.0kb upstream 5000 false chr1: 25498324-25503323 Medicago truncatula
Medtr1g057940 5.0kb downstream 5.0kb downstream 7458 true chr1: 25490866-25498323 Medicago truncatula
Medtr1g057940 5.0kb downstream 5.0kb downstream 5000 false chr1: 25490866-25495865 Medicago truncatula
Medtr1g057940 10.0kb upstream 10.0kb upstream 12458 true chr1: 25495866-25508323 Medicago truncatula
Medtr1g057940 10.0kb upstream 10.0kb upstream 10000 false chr1: 25498324-25508323 Medicago truncatula
Medtr1g057940 10.0kb downstream 10.0kb downstream 12458 true chr1: 25485866-25498323 Medicago truncatula
Medtr1g057940 10.0kb downstream 10.0kb downstream 10000 false chr1: 25485866-25495865 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314306 5265 Fabidae View MSA
124074738 5270 Rosid View MSA
123753523 5271 Pentapetalae View MSA
122794920 5272 Eudicot View MSA
122050664 5273 Angiosperm View MSA
121348530 5274 Embryophyte View MSA
123427624 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.015     Low Low
cufflinks 0.46        
cufflinks 0.404        
cufflinks 0.24        
cufflinks 0.52        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.501        
cufflinks 0.575        
cufflinks 0.433        

0 Strain