Gene : Medtr1g048990 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11404:SF24 - SUPEROXIDE DISMUTASE [FE] 2, CHLOROPLASTIC Description:  superoxide dismutase
Genomic Order:  2459 Name:  ? Medtr1g048990
Secondary Identifier:  ? PAC:31099205
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula DETOX1-PWY Medicago truncatula pathologic  
Mtruncatula DETOX1-PWY-1 Medicago truncatula pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g048990 0.5kb upstream 0.5kb upstream 3704 true chr1: 18923569-18927272 Medicago truncatula
Medtr1g048990 0.5kb upstream 0.5kb upstream 500 false chr1: 18923569-18924068 Medicago truncatula
Medtr1g048990 0.5kb downstream 0.5kb downstream 3704 true chr1: 18924069-18927772 Medicago truncatula
Medtr1g048990 0.5kb downstream 0.5kb downstream 500 false chr1: 18927273-18927772 Medicago truncatula
Medtr1g048990 1.0kb upstream 1.0kb upstream 4204 true chr1: 18923069-18927272 Medicago truncatula
Medtr1g048990 1.0kb upstream 1.0kb upstream 1000 false chr1: 18923069-18924068 Medicago truncatula
Medtr1g048990 1.0kb downstream 1.0kb downstream 4204 true chr1: 18924069-18928272 Medicago truncatula
Medtr1g048990 1.0kb downstream 1.0kb downstream 1000 false chr1: 18927273-18928272 Medicago truncatula
Medtr1g048990 2.0kb upstream 2.0kb upstream 5204 true chr1: 18922069-18927272 Medicago truncatula
Medtr1g048990 2.0kb upstream 2.0kb upstream 2000 false chr1: 18922069-18924068 Medicago truncatula
Medtr1g048990 2.0kb downstream 2.0kb downstream 5204 true chr1: 18924069-18929272 Medicago truncatula
Medtr1g048990 2.0kb downstream 2.0kb downstream 2000 false chr1: 18927273-18929272 Medicago truncatula
Medtr1g048990 5.0kb upstream 5.0kb upstream 8204 true chr1: 18919069-18927272 Medicago truncatula
Medtr1g048990 5.0kb upstream 5.0kb upstream 5000 false chr1: 18919069-18924068 Medicago truncatula
Medtr1g048990 5.0kb downstream 5.0kb downstream 8204 true chr1: 18924069-18932272 Medicago truncatula
Medtr1g048990 5.0kb downstream 5.0kb downstream 5000 false chr1: 18927273-18932272 Medicago truncatula
Medtr1g048990 10.0kb upstream 10.0kb upstream 13204 true chr1: 18914069-18927272 Medicago truncatula
Medtr1g048990 10.0kb upstream 10.0kb upstream 10000 false chr1: 18914069-18924068 Medicago truncatula
Medtr1g048990 10.0kb downstream 10.0kb downstream 13204 true chr1: 18924069-18937272 Medicago truncatula
Medtr1g048990 10.0kb downstream 10.0kb downstream 10000 false chr1: 18927273-18937272 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308023 5265 Fabidae View MSA
124072391 5270 Rosid View MSA
123741409 5271 Pentapetalae View MSA
122787652 5272 Eudicot View MSA
122047747 5273 Angiosperm View MSA
121351401 5274 Embryophyte View MSA
123425969 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.209        
cufflinks 4.732        
cufflinks 7.308       High
cufflinks 0.492       Low
cufflinks 4.165        
cufflinks 0.41       Low
cufflinks 1.449        
cufflinks 3.444        
cufflinks 1.528        

0 Strain