Gene : Medtr1g053715 M. truncatula Mt4.0v1
Defline:  (1 of 24) PF03110 - SBP domain (SBP) Description:  squamosa promoter-binding-like protein
Genomic Order:  2826 Name:  ? Medtr1g053715
Secondary Identifier:  ? PAC:31094812
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g053715 0.5kb upstream 0.5kb upstream 4840 true chr1: 22678198-22683037 Medicago truncatula
Medtr1g053715 0.5kb upstream 0.5kb upstream 500 false chr1: 22682538-22683037 Medicago truncatula
Medtr1g053715 0.5kb downstream 0.5kb downstream 4840 true chr1: 22677698-22682537 Medicago truncatula
Medtr1g053715 0.5kb downstream 0.5kb downstream 500 false chr1: 22677698-22678197 Medicago truncatula
Medtr1g053715 1.0kb upstream 1.0kb upstream 5340 true chr1: 22678198-22683537 Medicago truncatula
Medtr1g053715 1.0kb upstream 1.0kb upstream 1000 false chr1: 22682538-22683537 Medicago truncatula
Medtr1g053715 1.0kb downstream 1.0kb downstream 5340 true chr1: 22677198-22682537 Medicago truncatula
Medtr1g053715 1.0kb downstream 1.0kb downstream 1000 false chr1: 22677198-22678197 Medicago truncatula
Medtr1g053715 2.0kb upstream 2.0kb upstream 6340 true chr1: 22678198-22684537 Medicago truncatula
Medtr1g053715 2.0kb upstream 2.0kb upstream 2000 false chr1: 22682538-22684537 Medicago truncatula
Medtr1g053715 2.0kb downstream 2.0kb downstream 6340 true chr1: 22676198-22682537 Medicago truncatula
Medtr1g053715 2.0kb downstream 2.0kb downstream 2000 false chr1: 22676198-22678197 Medicago truncatula
Medtr1g053715 5.0kb upstream 5.0kb upstream 9340 true chr1: 22678198-22687537 Medicago truncatula
Medtr1g053715 5.0kb upstream 5.0kb upstream 5000 false chr1: 22682538-22687537 Medicago truncatula
Medtr1g053715 5.0kb downstream 5.0kb downstream 9340 true chr1: 22673198-22682537 Medicago truncatula
Medtr1g053715 5.0kb downstream 5.0kb downstream 5000 false chr1: 22673198-22678197 Medicago truncatula
Medtr1g053715 10.0kb upstream 10.0kb upstream 14340 true chr1: 22678198-22692537 Medicago truncatula
Medtr1g053715 10.0kb upstream 10.0kb upstream 10000 false chr1: 22682538-22692537 Medicago truncatula
Medtr1g053715 10.0kb downstream 10.0kb downstream 14340 true chr1: 22668198-22682537 Medicago truncatula
Medtr1g053715 10.0kb downstream 10.0kb downstream 10000 false chr1: 22668198-22678197 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297527 5265 Fabidae View MSA
124036057 5270 Rosid View MSA
123609468 5271 Pentapetalae View MSA
122644116 5272 Eudicot View MSA
122041751 5273 Angiosperm View MSA
123428908 5275 Viridiplantae View MSA
121309885 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low  
cufflinks 0.008     Low  
cufflinks 0.031     Low High

0 Strain