Gene : Medtr1g053270 M. truncatula Mt4.0v1
Defline:  (1 of 5) 6.1.1.1 - Tyrosine--tRNA ligase / Tyrosyl-tRNA synthetase Description:  tyrosine-tRNA ligase-like protein
Genomic Order:  2787 Name:  ? Medtr1g053270
Secondary Identifier:  ? PAC:31099050
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g053270 0.5kb upstream 0.5kb upstream 7983 true chr1: 22337040-22345022 Medicago truncatula
Medtr1g053270 0.5kb upstream 0.5kb upstream 500 false chr1: 22344523-22345022 Medicago truncatula
Medtr1g053270 0.5kb downstream 0.5kb downstream 7983 true chr1: 22336540-22344522 Medicago truncatula
Medtr1g053270 0.5kb downstream 0.5kb downstream 500 false chr1: 22336540-22337039 Medicago truncatula
Medtr1g053270 1.0kb upstream 1.0kb upstream 8483 true chr1: 22337040-22345522 Medicago truncatula
Medtr1g053270 1.0kb upstream 1.0kb upstream 1000 false chr1: 22344523-22345522 Medicago truncatula
Medtr1g053270 1.0kb downstream 1.0kb downstream 8483 true chr1: 22336040-22344522 Medicago truncatula
Medtr1g053270 1.0kb downstream 1.0kb downstream 1000 false chr1: 22336040-22337039 Medicago truncatula
Medtr1g053270 2.0kb upstream 2.0kb upstream 9483 true chr1: 22337040-22346522 Medicago truncatula
Medtr1g053270 2.0kb upstream 2.0kb upstream 2000 false chr1: 22344523-22346522 Medicago truncatula
Medtr1g053270 2.0kb downstream 2.0kb downstream 9483 true chr1: 22335040-22344522 Medicago truncatula
Medtr1g053270 2.0kb downstream 2.0kb downstream 2000 false chr1: 22335040-22337039 Medicago truncatula
Medtr1g053270 5.0kb upstream 5.0kb upstream 12483 true chr1: 22337040-22349522 Medicago truncatula
Medtr1g053270 5.0kb upstream 5.0kb upstream 5000 false chr1: 22344523-22349522 Medicago truncatula
Medtr1g053270 5.0kb downstream 5.0kb downstream 12483 true chr1: 22332040-22344522 Medicago truncatula
Medtr1g053270 5.0kb downstream 5.0kb downstream 5000 false chr1: 22332040-22337039 Medicago truncatula
Medtr1g053270 10.0kb upstream 10.0kb upstream 17483 true chr1: 22337040-22354522 Medicago truncatula
Medtr1g053270 10.0kb upstream 10.0kb upstream 10000 false chr1: 22344523-22354522 Medicago truncatula
Medtr1g053270 10.0kb downstream 10.0kb downstream 17483 true chr1: 22327040-22344522 Medicago truncatula
Medtr1g053270 10.0kb downstream 10.0kb downstream 10000 false chr1: 22327040-22337039 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041140 5273 Angiosperm View MSA
122300675 5265 Fabidae View MSA
124067853 5270 Rosid View MSA
123747436 5271 Pentapetalae View MSA
122790144 5272 Eudicot View MSA
121344192 5274 Embryophyte View MSA
123424631 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.794        
cufflinks 5.456        
cufflinks 4.672        
cufflinks 4.662        
cufflinks 7.293       High
cufflinks 2.347       Low
cufflinks 5.492        
cufflinks 4.558        
cufflinks 6.48        

0 Strain