Gene : Medtr1g054710 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR23270:SF10 - PROTEIN RRP5 HOMOLOG Description:  pre-rRNA processing protein Rrp5
Genomic Order:  2914 Name:  ? Medtr1g054710
Secondary Identifier:  ? PAC:31099622
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g054710 0.5kb upstream 0.5kb upstream 22924 true chr1: 23861930-23884853 Medicago truncatula
Medtr1g054710 0.5kb upstream 0.5kb upstream 500 false chr1: 23861930-23862429 Medicago truncatula
Medtr1g054710 0.5kb downstream 0.5kb downstream 22924 true chr1: 23862430-23885353 Medicago truncatula
Medtr1g054710 0.5kb downstream 0.5kb downstream 500 false chr1: 23884854-23885353 Medicago truncatula
Medtr1g054710 1.0kb upstream 1.0kb upstream 23424 true chr1: 23861430-23884853 Medicago truncatula
Medtr1g054710 1.0kb upstream 1.0kb upstream 1000 false chr1: 23861430-23862429 Medicago truncatula
Medtr1g054710 1.0kb downstream 1.0kb downstream 23424 true chr1: 23862430-23885853 Medicago truncatula
Medtr1g054710 1.0kb downstream 1.0kb downstream 1000 false chr1: 23884854-23885853 Medicago truncatula
Medtr1g054710 2.0kb upstream 2.0kb upstream 24424 true chr1: 23860430-23884853 Medicago truncatula
Medtr1g054710 2.0kb upstream 2.0kb upstream 2000 false chr1: 23860430-23862429 Medicago truncatula
Medtr1g054710 2.0kb downstream 2.0kb downstream 24424 true chr1: 23862430-23886853 Medicago truncatula
Medtr1g054710 2.0kb downstream 2.0kb downstream 2000 false chr1: 23884854-23886853 Medicago truncatula
Medtr1g054710 5.0kb upstream 5.0kb upstream 27424 true chr1: 23857430-23884853 Medicago truncatula
Medtr1g054710 5.0kb upstream 5.0kb upstream 5000 false chr1: 23857430-23862429 Medicago truncatula
Medtr1g054710 5.0kb downstream 5.0kb downstream 27424 true chr1: 23862430-23889853 Medicago truncatula
Medtr1g054710 5.0kb downstream 5.0kb downstream 5000 false chr1: 23884854-23889853 Medicago truncatula
Medtr1g054710 10.0kb upstream 10.0kb upstream 32424 true chr1: 23852430-23884853 Medicago truncatula
Medtr1g054710 10.0kb upstream 10.0kb upstream 10000 false chr1: 23852430-23862429 Medicago truncatula
Medtr1g054710 10.0kb downstream 10.0kb downstream 32424 true chr1: 23862430-23894853 Medicago truncatula
Medtr1g054710 10.0kb downstream 10.0kb downstream 10000 false chr1: 23884854-23894853 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303333 5265 Fabidae View MSA
124068160 5270 Rosid View MSA
123740236 5271 Pentapetalae View MSA
122787572 5272 Eudicot View MSA
122045709 5273 Angiosperm View MSA
121346258 5274 Embryophyte View MSA
123424813 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.735        
cufflinks 1.32        
cufflinks 1.875        
cufflinks 0.343       Low
cufflinks 4.708       High
cufflinks 0.246       Low
cufflinks 0.745        
cufflinks 2.28        
cufflinks 0.545        

0 Strain