Gene : Medtr1g039990 M. truncatula Mt4.0v1
Defline:  (1 of 1) 1.4.1.24 - 3-dehydroquinate synthase II / DHQ synthase II Description:  3-dehydroquinate synthase
Genomic Order:  1926 Name:  ? Medtr1g039990
Secondary Identifier:  ? PAC:31094371
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g039990 0.5kb upstream 0.5kb upstream 5350 true chr1: 14626839-14632188 Medicago truncatula
Medtr1g039990 0.5kb upstream 0.5kb upstream 500 false chr1: 14626839-14627338 Medicago truncatula
Medtr1g039990 0.5kb downstream 0.5kb downstream 5350 true chr1: 14627339-14632688 Medicago truncatula
Medtr1g039990 0.5kb downstream 0.5kb downstream 500 false chr1: 14632189-14632688 Medicago truncatula
Medtr1g039990 1.0kb upstream 1.0kb upstream 5850 true chr1: 14626339-14632188 Medicago truncatula
Medtr1g039990 1.0kb upstream 1.0kb upstream 1000 false chr1: 14626339-14627338 Medicago truncatula
Medtr1g039990 1.0kb downstream 1.0kb downstream 5850 true chr1: 14627339-14633188 Medicago truncatula
Medtr1g039990 1.0kb downstream 1.0kb downstream 1000 false chr1: 14632189-14633188 Medicago truncatula
Medtr1g039990 2.0kb upstream 2.0kb upstream 6850 true chr1: 14625339-14632188 Medicago truncatula
Medtr1g039990 2.0kb upstream 2.0kb upstream 2000 false chr1: 14625339-14627338 Medicago truncatula
Medtr1g039990 2.0kb downstream 2.0kb downstream 6850 true chr1: 14627339-14634188 Medicago truncatula
Medtr1g039990 2.0kb downstream 2.0kb downstream 2000 false chr1: 14632189-14634188 Medicago truncatula
Medtr1g039990 5.0kb upstream 5.0kb upstream 9850 true chr1: 14622339-14632188 Medicago truncatula
Medtr1g039990 5.0kb upstream 5.0kb upstream 5000 false chr1: 14622339-14627338 Medicago truncatula
Medtr1g039990 5.0kb downstream 5.0kb downstream 9850 true chr1: 14627339-14637188 Medicago truncatula
Medtr1g039990 5.0kb downstream 5.0kb downstream 5000 false chr1: 14632189-14637188 Medicago truncatula
Medtr1g039990 10.0kb upstream 10.0kb upstream 14850 true chr1: 14617339-14632188 Medicago truncatula
Medtr1g039990 10.0kb upstream 10.0kb upstream 10000 false chr1: 14617339-14627338 Medicago truncatula
Medtr1g039990 10.0kb downstream 10.0kb downstream 14850 true chr1: 14627339-14642188 Medicago truncatula
Medtr1g039990 10.0kb downstream 10.0kb downstream 10000 false chr1: 14632189-14642188 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305669 5265 Fabidae View MSA
124061503 5270 Rosid View MSA
123737168 5271 Pentapetalae View MSA
122788177 5272 Eudicot View MSA
122045215 5273 Angiosperm View MSA
121347286 5274 Embryophyte View MSA
123427412 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.975        
cufflinks 1.275        
cufflinks 0.959        
cufflinks 0.134       Low
cufflinks 1.705       High
cufflinks 0.068     Low Low
cufflinks 0.194        
cufflinks 0.998        
cufflinks 0.206        

0 Strain