Gene : Medtr1g075990 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR31165:SF13 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED Description:  DUF640 family protein
Genomic Order:  4092 Name:  ? Medtr1g075990
Secondary Identifier:  ? PAC:31097070
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g075990 0.5kb upstream 0.5kb upstream 1910 true chr1: 33671080-33672989 Medicago truncatula
Medtr1g075990 0.5kb upstream 0.5kb upstream 500 false chr1: 33672490-33672989 Medicago truncatula
Medtr1g075990 0.5kb downstream 0.5kb downstream 1910 true chr1: 33670580-33672489 Medicago truncatula
Medtr1g075990 0.5kb downstream 0.5kb downstream 500 false chr1: 33670580-33671079 Medicago truncatula
Medtr1g075990 1.0kb upstream 1.0kb upstream 2410 true chr1: 33671080-33673489 Medicago truncatula
Medtr1g075990 1.0kb upstream 1.0kb upstream 1000 false chr1: 33672490-33673489 Medicago truncatula
Medtr1g075990 1.0kb downstream 1.0kb downstream 2410 true chr1: 33670080-33672489 Medicago truncatula
Medtr1g075990 1.0kb downstream 1.0kb downstream 1000 false chr1: 33670080-33671079 Medicago truncatula
Medtr1g075990 2.0kb upstream 2.0kb upstream 3410 true chr1: 33671080-33674489 Medicago truncatula
Medtr1g075990 2.0kb upstream 2.0kb upstream 2000 false chr1: 33672490-33674489 Medicago truncatula
Medtr1g075990 2.0kb downstream 2.0kb downstream 3410 true chr1: 33669080-33672489 Medicago truncatula
Medtr1g075990 2.0kb downstream 2.0kb downstream 2000 false chr1: 33669080-33671079 Medicago truncatula
Medtr1g075990 5.0kb upstream 5.0kb upstream 6410 true chr1: 33671080-33677489 Medicago truncatula
Medtr1g075990 5.0kb upstream 5.0kb upstream 5000 false chr1: 33672490-33677489 Medicago truncatula
Medtr1g075990 5.0kb downstream 5.0kb downstream 6410 true chr1: 33666080-33672489 Medicago truncatula
Medtr1g075990 5.0kb downstream 5.0kb downstream 5000 false chr1: 33666080-33671079 Medicago truncatula
Medtr1g075990 10.0kb upstream 10.0kb upstream 11410 true chr1: 33671080-33682489 Medicago truncatula
Medtr1g075990 10.0kb upstream 10.0kb upstream 10000 false chr1: 33672490-33682489 Medicago truncatula
Medtr1g075990 10.0kb downstream 10.0kb downstream 11410 true chr1: 33661080-33672489 Medicago truncatula
Medtr1g075990 10.0kb downstream 10.0kb downstream 10000 false chr1: 33661080-33671079 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122288741 5265 Fabidae View MSA
124071658 5270 Rosid View MSA
123753170 5271 Pentapetalae View MSA
122789282 5272 Eudicot View MSA
122049887 5273 Angiosperm View MSA
121351474 5274 Embryophyte View MSA
123382179 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.733       High
cufflinks 0.086        
cufflinks 0.075     Low  
cufflinks 0.218        
cufflinks 0.06     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.082        
cufflinks 0.021     Low Low

0 Strain