Gene : Medtr1g086540 M. truncatula Mt4.0v1
Defline:  (1 of 140) 3.1.1.11 - Pectinesterase / Pectin methylesterase Description:  pectinesterase
Genomic Order:  4766 Name:  ? Medtr1g086540
Secondary Identifier:  ? PAC:31093652
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1081 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g086540 0.5kb upstream 0.5kb upstream 2288 true chr1: 38723076-38725363 Medicago truncatula
Medtr1g086540 0.5kb upstream 0.5kb upstream 500 false chr1: 38723076-38723575 Medicago truncatula
Medtr1g086540 0.5kb downstream 0.5kb downstream 2288 true chr1: 38723576-38725863 Medicago truncatula
Medtr1g086540 0.5kb downstream 0.5kb downstream 500 false chr1: 38725364-38725863 Medicago truncatula
Medtr1g086540 1.0kb upstream 1.0kb upstream 2788 true chr1: 38722576-38725363 Medicago truncatula
Medtr1g086540 1.0kb upstream 1.0kb upstream 1000 false chr1: 38722576-38723575 Medicago truncatula
Medtr1g086540 1.0kb downstream 1.0kb downstream 2788 true chr1: 38723576-38726363 Medicago truncatula
Medtr1g086540 1.0kb downstream 1.0kb downstream 1000 false chr1: 38725364-38726363 Medicago truncatula
Medtr1g086540 2.0kb upstream 2.0kb upstream 3788 true chr1: 38721576-38725363 Medicago truncatula
Medtr1g086540 2.0kb upstream 2.0kb upstream 2000 false chr1: 38721576-38723575 Medicago truncatula
Medtr1g086540 2.0kb downstream 2.0kb downstream 3788 true chr1: 38723576-38727363 Medicago truncatula
Medtr1g086540 2.0kb downstream 2.0kb downstream 2000 false chr1: 38725364-38727363 Medicago truncatula
Medtr1g086540 5.0kb upstream 5.0kb upstream 6788 true chr1: 38718576-38725363 Medicago truncatula
Medtr1g086540 5.0kb upstream 5.0kb upstream 5000 false chr1: 38718576-38723575 Medicago truncatula
Medtr1g086540 5.0kb downstream 5.0kb downstream 6788 true chr1: 38723576-38730363 Medicago truncatula
Medtr1g086540 5.0kb downstream 5.0kb downstream 5000 false chr1: 38725364-38730363 Medicago truncatula
Medtr1g086540 10.0kb upstream 10.0kb upstream 11788 true chr1: 38713576-38725363 Medicago truncatula
Medtr1g086540 10.0kb upstream 10.0kb upstream 10000 false chr1: 38713576-38723575 Medicago truncatula
Medtr1g086540 10.0kb downstream 10.0kb downstream 11788 true chr1: 38723576-38735363 Medicago truncatula
Medtr1g086540 10.0kb downstream 10.0kb downstream 10000 false chr1: 38725364-38735363 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296705 5265 Fabidae View MSA
124071464 5270 Rosid View MSA
123744111 5271 Pentapetalae View MSA
122794965 5272 Eudicot View MSA
122051382 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.033     Low Low
cufflinks 0.255        
cufflinks 0.327        
cufflinks 0.051     Low Low
cufflinks 0.128        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.06     Low  
cufflinks 0.28        
cufflinks 0.357       High

0 Strain