Gene : Medtr1g069780 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR12640 - RIBOPHORIN II Description:  oligosaccharyltransferase subunit ribophorin II
Genomic Order:  3670 Name:  ? Medtr1g069780
Secondary Identifier:  ? PAC:31096882
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g069780 0.5kb upstream 0.5kb upstream 9142 true chr1: 30440515-30449656 Medicago truncatula
Medtr1g069780 0.5kb upstream 0.5kb upstream 500 false chr1: 30440515-30441014 Medicago truncatula
Medtr1g069780 0.5kb downstream 0.5kb downstream 9142 true chr1: 30441015-30450156 Medicago truncatula
Medtr1g069780 0.5kb downstream 0.5kb downstream 500 false chr1: 30449657-30450156 Medicago truncatula
Medtr1g069780 1.0kb upstream 1.0kb upstream 9642 true chr1: 30440015-30449656 Medicago truncatula
Medtr1g069780 1.0kb upstream 1.0kb upstream 1000 false chr1: 30440015-30441014 Medicago truncatula
Medtr1g069780 1.0kb downstream 1.0kb downstream 9642 true chr1: 30441015-30450656 Medicago truncatula
Medtr1g069780 1.0kb downstream 1.0kb downstream 1000 false chr1: 30449657-30450656 Medicago truncatula
Medtr1g069780 2.0kb upstream 2.0kb upstream 10642 true chr1: 30439015-30449656 Medicago truncatula
Medtr1g069780 2.0kb upstream 2.0kb upstream 2000 false chr1: 30439015-30441014 Medicago truncatula
Medtr1g069780 2.0kb downstream 2.0kb downstream 10642 true chr1: 30441015-30451656 Medicago truncatula
Medtr1g069780 2.0kb downstream 2.0kb downstream 2000 false chr1: 30449657-30451656 Medicago truncatula
Medtr1g069780 5.0kb upstream 5.0kb upstream 13642 true chr1: 30436015-30449656 Medicago truncatula
Medtr1g069780 5.0kb upstream 5.0kb upstream 5000 false chr1: 30436015-30441014 Medicago truncatula
Medtr1g069780 5.0kb downstream 5.0kb downstream 13642 true chr1: 30441015-30454656 Medicago truncatula
Medtr1g069780 5.0kb downstream 5.0kb downstream 5000 false chr1: 30449657-30454656 Medicago truncatula
Medtr1g069780 10.0kb upstream 10.0kb upstream 18642 true chr1: 30431015-30449656 Medicago truncatula
Medtr1g069780 10.0kb upstream 10.0kb upstream 10000 false chr1: 30431015-30441014 Medicago truncatula
Medtr1g069780 10.0kb downstream 10.0kb downstream 18642 true chr1: 30441015-30459656 Medicago truncatula
Medtr1g069780 10.0kb downstream 10.0kb downstream 10000 false chr1: 30449657-30459656 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041028 5273 Angiosperm View MSA
122310826 5265 Fabidae View MSA
124066748 5270 Rosid View MSA
123737285 5271 Pentapetalae View MSA
122787550 5272 Eudicot View MSA
121344151 5274 Embryophyte View MSA
123379986 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.019        
cufflinks 7.943       High
cufflinks 4.587        
cufflinks 2.956        
cufflinks 8.111       High
cufflinks 0.58       Low
cufflinks 2.672        
cufflinks 4.326        
cufflinks 5.854        

0 Strain