Gene : Medtr1g072130 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF02178//PF16135 - AT hook motif (AT_hook) // TPL-binding domain in jasmonate signalling (Jas) Description:  PHD finger protein, putative
Genomic Order:  3852 Name:  ? Medtr1g072130
Secondary Identifier:  ? PAC:31093032
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g072130 0.5kb upstream 0.5kb upstream 11017 true chr1: 31986308-31997324 Medicago truncatula
Medtr1g072130 0.5kb upstream 0.5kb upstream 500 false chr1: 31996825-31997324 Medicago truncatula
Medtr1g072130 0.5kb downstream 0.5kb downstream 11017 true chr1: 31985808-31996824 Medicago truncatula
Medtr1g072130 0.5kb downstream 0.5kb downstream 500 false chr1: 31985808-31986307 Medicago truncatula
Medtr1g072130 1.0kb upstream 1.0kb upstream 11517 true chr1: 31986308-31997824 Medicago truncatula
Medtr1g072130 1.0kb upstream 1.0kb upstream 1000 false chr1: 31996825-31997824 Medicago truncatula
Medtr1g072130 1.0kb downstream 1.0kb downstream 11517 true chr1: 31985308-31996824 Medicago truncatula
Medtr1g072130 1.0kb downstream 1.0kb downstream 1000 false chr1: 31985308-31986307 Medicago truncatula
Medtr1g072130 2.0kb upstream 2.0kb upstream 12517 true chr1: 31986308-31998824 Medicago truncatula
Medtr1g072130 2.0kb upstream 2.0kb upstream 2000 false chr1: 31996825-31998824 Medicago truncatula
Medtr1g072130 2.0kb downstream 2.0kb downstream 12517 true chr1: 31984308-31996824 Medicago truncatula
Medtr1g072130 2.0kb downstream 2.0kb downstream 2000 false chr1: 31984308-31986307 Medicago truncatula
Medtr1g072130 5.0kb upstream 5.0kb upstream 15517 true chr1: 31986308-32001824 Medicago truncatula
Medtr1g072130 5.0kb upstream 5.0kb upstream 5000 false chr1: 31996825-32001824 Medicago truncatula
Medtr1g072130 5.0kb downstream 5.0kb downstream 15517 true chr1: 31981308-31996824 Medicago truncatula
Medtr1g072130 5.0kb downstream 5.0kb downstream 5000 false chr1: 31981308-31986307 Medicago truncatula
Medtr1g072130 10.0kb upstream 10.0kb upstream 20517 true chr1: 31986308-32006824 Medicago truncatula
Medtr1g072130 10.0kb upstream 10.0kb upstream 10000 false chr1: 31996825-32006824 Medicago truncatula
Medtr1g072130 10.0kb downstream 10.0kb downstream 20517 true chr1: 31976308-31996824 Medicago truncatula
Medtr1g072130 10.0kb downstream 10.0kb downstream 10000 false chr1: 31976308-31986307 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311239 5265 Fabidae View MSA
124071482 5270 Rosid View MSA
123742253 5271 Pentapetalae View MSA
122793058 5272 Eudicot View MSA
122043128 5273 Angiosperm View MSA
121351041 5274 Embryophyte View MSA
123425735 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.564       High
cufflinks 4.217        
cufflinks 5.669        
cufflinks 0.804       Low
cufflinks 5.394        
cufflinks 1.521       Low
cufflinks 3.151        
cufflinks 4.253        
cufflinks 2.275        

0 Strain