Gene : Medtr1g080890 M. truncatula Mt4.0v1
Defline:  (1 of 161) PF00010 - Helix-loop-helix DNA-binding domain (HLH) Description:  transcription factor UNE12-like protein
Genomic Order:  4406 Name:  ? Medtr1g080890
Secondary Identifier:  ? PAC:31092602
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g080890 0.5kb upstream 0.5kb upstream 7731 true chr1: 35993128-36000858 Medicago truncatula
Medtr1g080890 0.5kb upstream 0.5kb upstream 500 false chr1: 36000359-36000858 Medicago truncatula
Medtr1g080890 0.5kb downstream 0.5kb downstream 7731 true chr1: 35992628-36000358 Medicago truncatula
Medtr1g080890 0.5kb downstream 0.5kb downstream 500 false chr1: 35992628-35993127 Medicago truncatula
Medtr1g080890 1.0kb upstream 1.0kb upstream 8231 true chr1: 35993128-36001358 Medicago truncatula
Medtr1g080890 1.0kb upstream 1.0kb upstream 1000 false chr1: 36000359-36001358 Medicago truncatula
Medtr1g080890 1.0kb downstream 1.0kb downstream 8231 true chr1: 35992128-36000358 Medicago truncatula
Medtr1g080890 1.0kb downstream 1.0kb downstream 1000 false chr1: 35992128-35993127 Medicago truncatula
Medtr1g080890 2.0kb upstream 2.0kb upstream 9231 true chr1: 35993128-36002358 Medicago truncatula
Medtr1g080890 2.0kb upstream 2.0kb upstream 2000 false chr1: 36000359-36002358 Medicago truncatula
Medtr1g080890 2.0kb downstream 2.0kb downstream 9231 true chr1: 35991128-36000358 Medicago truncatula
Medtr1g080890 2.0kb downstream 2.0kb downstream 2000 false chr1: 35991128-35993127 Medicago truncatula
Medtr1g080890 5.0kb upstream 5.0kb upstream 12231 true chr1: 35993128-36005358 Medicago truncatula
Medtr1g080890 5.0kb upstream 5.0kb upstream 5000 false chr1: 36000359-36005358 Medicago truncatula
Medtr1g080890 5.0kb downstream 5.0kb downstream 12231 true chr1: 35988128-36000358 Medicago truncatula
Medtr1g080890 5.0kb downstream 5.0kb downstream 5000 false chr1: 35988128-35993127 Medicago truncatula
Medtr1g080890 10.0kb upstream 10.0kb upstream 17231 true chr1: 35993128-36010358 Medicago truncatula
Medtr1g080890 10.0kb upstream 10.0kb upstream 10000 false chr1: 36000359-36010358 Medicago truncatula
Medtr1g080890 10.0kb downstream 10.0kb downstream 17231 true chr1: 35983128-36000358 Medicago truncatula
Medtr1g080890 10.0kb downstream 10.0kb downstream 10000 false chr1: 35983128-35993127 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306645 5265 Fabidae View MSA
124070246 5270 Rosid View MSA
123744901 5271 Pentapetalae View MSA
122795444 5272 Eudicot View MSA
122046496 5273 Angiosperm View MSA
121350974 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.531     High  
cufflinks 6.223        
cufflinks 7.156        
cufflinks 20.651     High High
cufflinks 6.422        
cufflinks 14.613     High  
cufflinks 19.585     High High
cufflinks 5.514       Low
cufflinks 9.392        

0 Strain