Gene : Medtr1g084980 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG4304 - Transcriptional repressors of the hairy/E(spl) family (contains HLH) Description:  phytochrome-interacting factor 3.1
Genomic Order:  4659 Name:  ? Medtr1g084980
Secondary Identifier:  ? PAC:31098276
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g084980 0.5kb upstream 0.5kb upstream 4964 true chr1: 37932121-37937084 Medicago truncatula
Medtr1g084980 0.5kb upstream 0.5kb upstream 500 false chr1: 37932121-37932620 Medicago truncatula
Medtr1g084980 0.5kb downstream 0.5kb downstream 4964 true chr1: 37932621-37937584 Medicago truncatula
Medtr1g084980 0.5kb downstream 0.5kb downstream 500 false chr1: 37937085-37937584 Medicago truncatula
Medtr1g084980 1.0kb upstream 1.0kb upstream 5464 true chr1: 37931621-37937084 Medicago truncatula
Medtr1g084980 1.0kb upstream 1.0kb upstream 1000 false chr1: 37931621-37932620 Medicago truncatula
Medtr1g084980 1.0kb downstream 1.0kb downstream 5464 true chr1: 37932621-37938084 Medicago truncatula
Medtr1g084980 1.0kb downstream 1.0kb downstream 1000 false chr1: 37937085-37938084 Medicago truncatula
Medtr1g084980 2.0kb upstream 2.0kb upstream 6464 true chr1: 37930621-37937084 Medicago truncatula
Medtr1g084980 2.0kb upstream 2.0kb upstream 2000 false chr1: 37930621-37932620 Medicago truncatula
Medtr1g084980 2.0kb downstream 2.0kb downstream 6464 true chr1: 37932621-37939084 Medicago truncatula
Medtr1g084980 2.0kb downstream 2.0kb downstream 2000 false chr1: 37937085-37939084 Medicago truncatula
Medtr1g084980 5.0kb upstream 5.0kb upstream 9464 true chr1: 37927621-37937084 Medicago truncatula
Medtr1g084980 5.0kb upstream 5.0kb upstream 5000 false chr1: 37927621-37932620 Medicago truncatula
Medtr1g084980 5.0kb downstream 5.0kb downstream 9464 true chr1: 37932621-37942084 Medicago truncatula
Medtr1g084980 5.0kb downstream 5.0kb downstream 5000 false chr1: 37937085-37942084 Medicago truncatula
Medtr1g084980 10.0kb upstream 10.0kb upstream 14464 true chr1: 37922621-37937084 Medicago truncatula
Medtr1g084980 10.0kb upstream 10.0kb upstream 10000 false chr1: 37922621-37932620 Medicago truncatula
Medtr1g084980 10.0kb downstream 10.0kb downstream 14464 true chr1: 37932621-37947084 Medicago truncatula
Medtr1g084980 10.0kb downstream 10.0kb downstream 10000 false chr1: 37937085-37947084 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300539 5265 Fabidae View MSA
124069526 5270 Rosid View MSA
123737897 5271 Pentapetalae View MSA
122794460 5272 Eudicot View MSA
122048181 5273 Angiosperm View MSA
121348763 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.084       Low
cufflinks 9.709     High High
cufflinks 9.325       High
cufflinks 0.168        
cufflinks 8.937       High
cufflinks 0.045     Low Low
cufflinks 0.242        
cufflinks 8.035        
cufflinks 0.391        

0 Strain