Gene : Medtr1g085160 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR24423:SF519 - PHYTOCHROME A Description:  phytochrome protein A
Genomic Order:  4672 Name:  ? Medtr1g085160
Secondary Identifier:  ? PAC:31100822
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g085160 0.5kb upstream 0.5kb upstream 5941 true chr1: 38021654-38027594 Medicago truncatula
Medtr1g085160 0.5kb upstream 0.5kb upstream 500 false chr1: 38027095-38027594 Medicago truncatula
Medtr1g085160 0.5kb downstream 0.5kb downstream 5941 true chr1: 38021154-38027094 Medicago truncatula
Medtr1g085160 0.5kb downstream 0.5kb downstream 500 false chr1: 38021154-38021653 Medicago truncatula
Medtr1g085160 1.0kb upstream 1.0kb upstream 6441 true chr1: 38021654-38028094 Medicago truncatula
Medtr1g085160 1.0kb upstream 1.0kb upstream 1000 false chr1: 38027095-38028094 Medicago truncatula
Medtr1g085160 1.0kb downstream 1.0kb downstream 6441 true chr1: 38020654-38027094 Medicago truncatula
Medtr1g085160 1.0kb downstream 1.0kb downstream 1000 false chr1: 38020654-38021653 Medicago truncatula
Medtr1g085160 2.0kb upstream 2.0kb upstream 7441 true chr1: 38021654-38029094 Medicago truncatula
Medtr1g085160 2.0kb upstream 2.0kb upstream 2000 false chr1: 38027095-38029094 Medicago truncatula
Medtr1g085160 2.0kb downstream 2.0kb downstream 7441 true chr1: 38019654-38027094 Medicago truncatula
Medtr1g085160 2.0kb downstream 2.0kb downstream 2000 false chr1: 38019654-38021653 Medicago truncatula
Medtr1g085160 5.0kb upstream 5.0kb upstream 10441 true chr1: 38021654-38032094 Medicago truncatula
Medtr1g085160 5.0kb upstream 5.0kb upstream 5000 false chr1: 38027095-38032094 Medicago truncatula
Medtr1g085160 5.0kb downstream 5.0kb downstream 10441 true chr1: 38016654-38027094 Medicago truncatula
Medtr1g085160 5.0kb downstream 5.0kb downstream 5000 false chr1: 38016654-38021653 Medicago truncatula
Medtr1g085160 10.0kb upstream 10.0kb upstream 15441 true chr1: 38021654-38037094 Medicago truncatula
Medtr1g085160 10.0kb upstream 10.0kb upstream 10000 false chr1: 38027095-38037094 Medicago truncatula
Medtr1g085160 10.0kb downstream 10.0kb downstream 15441 true chr1: 38011654-38027094 Medicago truncatula
Medtr1g085160 10.0kb downstream 10.0kb downstream 10000 false chr1: 38011654-38021653 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299283 5265 Fabidae View MSA
124063137 5270 Rosid View MSA
123743412 5271 Pentapetalae View MSA
122786313 5272 Eudicot View MSA
122046553 5273 Angiosperm View MSA
121310619 5274 Embryophyte View MSA
123348057 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.553        
cufflinks 11.944     High  
cufflinks 26.178     High High
cufflinks 1.278        
cufflinks 16.436     High  
cufflinks 0.583       Low
cufflinks 1.837        
cufflinks 17.014     High High
cufflinks 0.833       Low

0 Strain