Gene : Medtr1g086000 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR33271:SF7 - PLASTID TRANSCRIPTIONALLY ACTIVE 18 Description:  plastid transcriptionally active protein
Genomic Order:  4727 Name:  ? Medtr1g086000
Secondary Identifier:  ? PAC:31099988
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g086000 0.5kb upstream 0.5kb upstream 2829 true chr1: 38478579-38481407 Medicago truncatula
Medtr1g086000 0.5kb upstream 0.5kb upstream 500 false chr1: 38480908-38481407 Medicago truncatula
Medtr1g086000 0.5kb downstream 0.5kb downstream 2829 true chr1: 38478079-38480907 Medicago truncatula
Medtr1g086000 0.5kb downstream 0.5kb downstream 500 false chr1: 38478079-38478578 Medicago truncatula
Medtr1g086000 1.0kb upstream 1.0kb upstream 3329 true chr1: 38478579-38481907 Medicago truncatula
Medtr1g086000 1.0kb upstream 1.0kb upstream 1000 false chr1: 38480908-38481907 Medicago truncatula
Medtr1g086000 1.0kb downstream 1.0kb downstream 3329 true chr1: 38477579-38480907 Medicago truncatula
Medtr1g086000 1.0kb downstream 1.0kb downstream 1000 false chr1: 38477579-38478578 Medicago truncatula
Medtr1g086000 2.0kb upstream 2.0kb upstream 4329 true chr1: 38478579-38482907 Medicago truncatula
Medtr1g086000 2.0kb upstream 2.0kb upstream 2000 false chr1: 38480908-38482907 Medicago truncatula
Medtr1g086000 2.0kb downstream 2.0kb downstream 4329 true chr1: 38476579-38480907 Medicago truncatula
Medtr1g086000 2.0kb downstream 2.0kb downstream 2000 false chr1: 38476579-38478578 Medicago truncatula
Medtr1g086000 5.0kb upstream 5.0kb upstream 7329 true chr1: 38478579-38485907 Medicago truncatula
Medtr1g086000 5.0kb upstream 5.0kb upstream 5000 false chr1: 38480908-38485907 Medicago truncatula
Medtr1g086000 5.0kb downstream 5.0kb downstream 7329 true chr1: 38473579-38480907 Medicago truncatula
Medtr1g086000 5.0kb downstream 5.0kb downstream 5000 false chr1: 38473579-38478578 Medicago truncatula
Medtr1g086000 10.0kb upstream 10.0kb upstream 12329 true chr1: 38478579-38490907 Medicago truncatula
Medtr1g086000 10.0kb upstream 10.0kb upstream 10000 false chr1: 38480908-38490907 Medicago truncatula
Medtr1g086000 10.0kb downstream 10.0kb downstream 12329 true chr1: 38468579-38480907 Medicago truncatula
Medtr1g086000 10.0kb downstream 10.0kb downstream 10000 false chr1: 38468579-38478578 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301617 5265 Fabidae View MSA
124065223 5270 Rosid View MSA
123741295 5271 Pentapetalae View MSA
122787769 5272 Eudicot View MSA
122043400 5273 Angiosperm View MSA
121346471 5274 Embryophyte View MSA
123380389 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.935        
cufflinks 5.851        
cufflinks 16.568     High High
cufflinks 1.36        
cufflinks 16.632     High High
cufflinks 0.678       Low
cufflinks 1.836        
cufflinks 13.479     High High
cufflinks 1.136        

0 Strain