Gene : Medtr1g107550 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR12411:SF344 - CYSTEINE PROTEASE COMPONENT OF PROTEASE-INHIBITOR COMPLEX-RELATED Description:  papain family cysteine protease
Genomic Order:  6148 Name:  ? Medtr1g107550
Secondary Identifier:  ? PAC:31099462
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g107550 0.5kb upstream 0.5kb upstream 2805 true chr1: 48878969-48881773 Medicago truncatula
Medtr1g107550 0.5kb upstream 0.5kb upstream 500 false chr1: 48881274-48881773 Medicago truncatula
Medtr1g107550 0.5kb downstream 0.5kb downstream 2805 true chr1: 48878469-48881273 Medicago truncatula
Medtr1g107550 0.5kb downstream 0.5kb downstream 500 false chr1: 48878469-48878968 Medicago truncatula
Medtr1g107550 1.0kb upstream 1.0kb upstream 3305 true chr1: 48878969-48882273 Medicago truncatula
Medtr1g107550 1.0kb upstream 1.0kb upstream 1000 false chr1: 48881274-48882273 Medicago truncatula
Medtr1g107550 1.0kb downstream 1.0kb downstream 3305 true chr1: 48877969-48881273 Medicago truncatula
Medtr1g107550 1.0kb downstream 1.0kb downstream 1000 false chr1: 48877969-48878968 Medicago truncatula
Medtr1g107550 2.0kb upstream 2.0kb upstream 4305 true chr1: 48878969-48883273 Medicago truncatula
Medtr1g107550 2.0kb upstream 2.0kb upstream 2000 false chr1: 48881274-48883273 Medicago truncatula
Medtr1g107550 2.0kb downstream 2.0kb downstream 4305 true chr1: 48876969-48881273 Medicago truncatula
Medtr1g107550 2.0kb downstream 2.0kb downstream 2000 false chr1: 48876969-48878968 Medicago truncatula
Medtr1g107550 5.0kb upstream 5.0kb upstream 7305 true chr1: 48878969-48886273 Medicago truncatula
Medtr1g107550 5.0kb upstream 5.0kb upstream 5000 false chr1: 48881274-48886273 Medicago truncatula
Medtr1g107550 5.0kb downstream 5.0kb downstream 7305 true chr1: 48873969-48881273 Medicago truncatula
Medtr1g107550 5.0kb downstream 5.0kb downstream 5000 false chr1: 48873969-48878968 Medicago truncatula
Medtr1g107550 10.0kb upstream 10.0kb upstream 12305 true chr1: 48878969-48891273 Medicago truncatula
Medtr1g107550 10.0kb upstream 10.0kb upstream 10000 false chr1: 48881274-48891273 Medicago truncatula
Medtr1g107550 10.0kb downstream 10.0kb downstream 12305 true chr1: 48868969-48881273 Medicago truncatula
Medtr1g107550 10.0kb downstream 10.0kb downstream 10000 false chr1: 48868969-48878968 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311370 5265 Fabidae View MSA
124071516 5270 Rosid View MSA
123751389 5271 Pentapetalae View MSA
122796567 5272 Eudicot View MSA
122043914 5273 Angiosperm View MSA
123428950 5275 Viridiplantae View MSA
121348634 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.06     Low Low
cufflinks 1.41        
cufflinks 1.422        
cufflinks 0.142       Low
cufflinks 2.57       High
cufflinks 0.414        
cufflinks 0.364        
cufflinks 1.211        
cufflinks 0.386        

0 Strain