Gene : Medtr1g102890 M. truncatula Mt4.0v1
Defline:  (1 of 2) 1.13.11.53 - Acireductone dioxygenase (Ni(2+)-requiring) / E-2 Description:  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
Genomic Order:  5805 Name:  ? Medtr1g102890
Secondary Identifier:  ? PAC:31099787
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4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-4361 Medicago truncatula pathologic  
Mtruncatula PWY-5389 Medicago truncatula pathologic  
Mtruncatula PWY-7270 Medicago truncatula pathologic  
Mtruncatula PWY-7528 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g102890 0.5kb upstream 0.5kb upstream 2534 true chr1: 46503093-46505626 Medicago truncatula
Medtr1g102890 0.5kb upstream 0.5kb upstream 500 false chr1: 46505127-46505626 Medicago truncatula
Medtr1g102890 0.5kb downstream 0.5kb downstream 2534 true chr1: 46502593-46505126 Medicago truncatula
Medtr1g102890 0.5kb downstream 0.5kb downstream 500 false chr1: 46502593-46503092 Medicago truncatula
Medtr1g102890 1.0kb upstream 1.0kb upstream 3034 true chr1: 46503093-46506126 Medicago truncatula
Medtr1g102890 1.0kb upstream 1.0kb upstream 1000 false chr1: 46505127-46506126 Medicago truncatula
Medtr1g102890 1.0kb downstream 1.0kb downstream 3034 true chr1: 46502093-46505126 Medicago truncatula
Medtr1g102890 1.0kb downstream 1.0kb downstream 1000 false chr1: 46502093-46503092 Medicago truncatula
Medtr1g102890 2.0kb upstream 2.0kb upstream 4034 true chr1: 46503093-46507126 Medicago truncatula
Medtr1g102890 2.0kb upstream 2.0kb upstream 2000 false chr1: 46505127-46507126 Medicago truncatula
Medtr1g102890 2.0kb downstream 2.0kb downstream 4034 true chr1: 46501093-46505126 Medicago truncatula
Medtr1g102890 2.0kb downstream 2.0kb downstream 2000 false chr1: 46501093-46503092 Medicago truncatula
Medtr1g102890 5.0kb upstream 5.0kb upstream 7034 true chr1: 46503093-46510126 Medicago truncatula
Medtr1g102890 5.0kb upstream 5.0kb upstream 5000 false chr1: 46505127-46510126 Medicago truncatula
Medtr1g102890 5.0kb downstream 5.0kb downstream 7034 true chr1: 46498093-46505126 Medicago truncatula
Medtr1g102890 5.0kb downstream 5.0kb downstream 5000 false chr1: 46498093-46503092 Medicago truncatula
Medtr1g102890 10.0kb upstream 10.0kb upstream 12034 true chr1: 46503093-46515126 Medicago truncatula
Medtr1g102890 10.0kb upstream 10.0kb upstream 10000 false chr1: 46505127-46515126 Medicago truncatula
Medtr1g102890 10.0kb downstream 10.0kb downstream 12034 true chr1: 46493093-46505126 Medicago truncatula
Medtr1g102890 10.0kb downstream 10.0kb downstream 10000 false chr1: 46493093-46503092 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308555 5265 Fabidae View MSA
124070684 5270 Rosid View MSA
123741202 5271 Pentapetalae View MSA
122793339 5272 Eudicot View MSA
122046510 5273 Angiosperm View MSA
121343851 5274 Embryophyte View MSA
123424670 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.602        
cufflinks 8.505        
cufflinks 8.511        
cufflinks 1.001       Low
cufflinks 12.528     High High
cufflinks 0.62       Low
cufflinks 1.864        
cufflinks 7.525        
cufflinks 1.663        

0 Strain