Gene : Medtr1g103100 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR11830 - 40S RIBOSOMAL PROTEIN S3A Description:  40S ribosomal protein S3a-1
Genomic Order:  5818 Name:  ? Medtr1g103100
Secondary Identifier:  ? PAC:31096695
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g103100 0.5kb upstream 0.5kb upstream 3189 true chr1: 46644611-46647799 Medicago truncatula
Medtr1g103100 0.5kb upstream 0.5kb upstream 500 false chr1: 46644611-46645110 Medicago truncatula
Medtr1g103100 0.5kb downstream 0.5kb downstream 3189 true chr1: 46645111-46648299 Medicago truncatula
Medtr1g103100 0.5kb downstream 0.5kb downstream 500 false chr1: 46647800-46648299 Medicago truncatula
Medtr1g103100 1.0kb upstream 1.0kb upstream 3689 true chr1: 46644111-46647799 Medicago truncatula
Medtr1g103100 1.0kb upstream 1.0kb upstream 1000 false chr1: 46644111-46645110 Medicago truncatula
Medtr1g103100 1.0kb downstream 1.0kb downstream 3689 true chr1: 46645111-46648799 Medicago truncatula
Medtr1g103100 1.0kb downstream 1.0kb downstream 1000 false chr1: 46647800-46648799 Medicago truncatula
Medtr1g103100 2.0kb upstream 2.0kb upstream 4689 true chr1: 46643111-46647799 Medicago truncatula
Medtr1g103100 2.0kb upstream 2.0kb upstream 2000 false chr1: 46643111-46645110 Medicago truncatula
Medtr1g103100 2.0kb downstream 2.0kb downstream 4689 true chr1: 46645111-46649799 Medicago truncatula
Medtr1g103100 2.0kb downstream 2.0kb downstream 2000 false chr1: 46647800-46649799 Medicago truncatula
Medtr1g103100 5.0kb upstream 5.0kb upstream 7689 true chr1: 46640111-46647799 Medicago truncatula
Medtr1g103100 5.0kb upstream 5.0kb upstream 5000 false chr1: 46640111-46645110 Medicago truncatula
Medtr1g103100 5.0kb downstream 5.0kb downstream 7689 true chr1: 46645111-46652799 Medicago truncatula
Medtr1g103100 5.0kb downstream 5.0kb downstream 5000 false chr1: 46647800-46652799 Medicago truncatula
Medtr1g103100 10.0kb upstream 10.0kb upstream 12689 true chr1: 46635111-46647799 Medicago truncatula
Medtr1g103100 10.0kb upstream 10.0kb upstream 10000 false chr1: 46635111-46645110 Medicago truncatula
Medtr1g103100 10.0kb downstream 10.0kb downstream 12689 true chr1: 46645111-46657799 Medicago truncatula
Medtr1g103100 10.0kb downstream 10.0kb downstream 10000 false chr1: 46647800-46657799 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307732 5265 Fabidae View MSA
124066895 5270 Rosid View MSA
123743383 5271 Pentapetalae View MSA
122787922 5272 Eudicot View MSA
122049456 5273 Angiosperm View MSA
121347467 5274 Embryophyte View MSA
123424177 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.588       Low
cufflinks 5.6        
cufflinks 4.757        
cufflinks 4.697        
cufflinks 12.158     High High
cufflinks 3.694        
cufflinks 6.221        
cufflinks 6.932        
cufflinks 11.578     High High

0 Strain