Gene : Medtr1g103820 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG3143 - Imidazoleglycerol-phosphate dehydratase Description:  imidazoleglycerol-phosphate dehydratase
Genomic Order:  5875 Name:  ? Medtr1g103820
Secondary Identifier:  ? PAC:31099459
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula HISTSYN-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g103820 0.5kb upstream 0.5kb upstream 4250 true chr1: 46982177-46986426 Medicago truncatula
Medtr1g103820 0.5kb upstream 0.5kb upstream 500 false chr1: 46985927-46986426 Medicago truncatula
Medtr1g103820 0.5kb downstream 0.5kb downstream 4250 true chr1: 46981677-46985926 Medicago truncatula
Medtr1g103820 0.5kb downstream 0.5kb downstream 500 false chr1: 46981677-46982176 Medicago truncatula
Medtr1g103820 1.0kb upstream 1.0kb upstream 4750 true chr1: 46982177-46986926 Medicago truncatula
Medtr1g103820 1.0kb upstream 1.0kb upstream 1000 false chr1: 46985927-46986926 Medicago truncatula
Medtr1g103820 1.0kb downstream 1.0kb downstream 4750 true chr1: 46981177-46985926 Medicago truncatula
Medtr1g103820 1.0kb downstream 1.0kb downstream 1000 false chr1: 46981177-46982176 Medicago truncatula
Medtr1g103820 2.0kb upstream 2.0kb upstream 5750 true chr1: 46982177-46987926 Medicago truncatula
Medtr1g103820 2.0kb upstream 2.0kb upstream 2000 false chr1: 46985927-46987926 Medicago truncatula
Medtr1g103820 2.0kb downstream 2.0kb downstream 5750 true chr1: 46980177-46985926 Medicago truncatula
Medtr1g103820 2.0kb downstream 2.0kb downstream 2000 false chr1: 46980177-46982176 Medicago truncatula
Medtr1g103820 5.0kb upstream 5.0kb upstream 8750 true chr1: 46982177-46990926 Medicago truncatula
Medtr1g103820 5.0kb upstream 5.0kb upstream 5000 false chr1: 46985927-46990926 Medicago truncatula
Medtr1g103820 5.0kb downstream 5.0kb downstream 8750 true chr1: 46977177-46985926 Medicago truncatula
Medtr1g103820 5.0kb downstream 5.0kb downstream 5000 false chr1: 46977177-46982176 Medicago truncatula
Medtr1g103820 10.0kb upstream 10.0kb upstream 13750 true chr1: 46982177-46995926 Medicago truncatula
Medtr1g103820 10.0kb upstream 10.0kb upstream 10000 false chr1: 46985927-46995926 Medicago truncatula
Medtr1g103820 10.0kb downstream 10.0kb downstream 13750 true chr1: 46972177-46985926 Medicago truncatula
Medtr1g103820 10.0kb downstream 10.0kb downstream 10000 false chr1: 46972177-46982176 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307930 5265 Fabidae View MSA
124067658 5270 Rosid View MSA
123737408 5271 Pentapetalae View MSA
122786767 5272 Eudicot View MSA
122045110 5273 Angiosperm View MSA
121344413 5274 Embryophyte View MSA
123423926 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.432       Low
cufflinks 13.858     High High
cufflinks 12.035     High  
cufflinks 4.054        
cufflinks 16.948     High High
cufflinks 1.722       Low
cufflinks 3.285        
cufflinks 11.59     High  
cufflinks 5.311        

0 Strain