Gene : Medtr1g095250 M. truncatula Mt4.0v1
Defline:  (1 of 2) 4.2.3.5 - Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyase Description:  chorismate synthase
Genomic Order:  5310 Name:  ? Medtr1g095250
Secondary Identifier:  ? PAC:31099562
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula ARO-PWY Medicago truncatula pathologic  
Mtruncatula PWY-6163 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g095250 0.5kb upstream 0.5kb upstream 9680 true chr1: 42869055-42878734 Medicago truncatula
Medtr1g095250 0.5kb upstream 0.5kb upstream 500 false chr1: 42878235-42878734 Medicago truncatula
Medtr1g095250 0.5kb downstream 0.5kb downstream 9680 true chr1: 42868555-42878234 Medicago truncatula
Medtr1g095250 0.5kb downstream 0.5kb downstream 500 false chr1: 42868555-42869054 Medicago truncatula
Medtr1g095250 1.0kb upstream 1.0kb upstream 10180 true chr1: 42869055-42879234 Medicago truncatula
Medtr1g095250 1.0kb upstream 1.0kb upstream 1000 false chr1: 42878235-42879234 Medicago truncatula
Medtr1g095250 1.0kb downstream 1.0kb downstream 10180 true chr1: 42868055-42878234 Medicago truncatula
Medtr1g095250 1.0kb downstream 1.0kb downstream 1000 false chr1: 42868055-42869054 Medicago truncatula
Medtr1g095250 2.0kb upstream 2.0kb upstream 11180 true chr1: 42869055-42880234 Medicago truncatula
Medtr1g095250 2.0kb upstream 2.0kb upstream 2000 false chr1: 42878235-42880234 Medicago truncatula
Medtr1g095250 2.0kb downstream 2.0kb downstream 11180 true chr1: 42867055-42878234 Medicago truncatula
Medtr1g095250 2.0kb downstream 2.0kb downstream 2000 false chr1: 42867055-42869054 Medicago truncatula
Medtr1g095250 5.0kb upstream 5.0kb upstream 14180 true chr1: 42869055-42883234 Medicago truncatula
Medtr1g095250 5.0kb upstream 5.0kb upstream 5000 false chr1: 42878235-42883234 Medicago truncatula
Medtr1g095250 5.0kb downstream 5.0kb downstream 14180 true chr1: 42864055-42878234 Medicago truncatula
Medtr1g095250 5.0kb downstream 5.0kb downstream 5000 false chr1: 42864055-42869054 Medicago truncatula
Medtr1g095250 10.0kb upstream 10.0kb upstream 19180 true chr1: 42869055-42888234 Medicago truncatula
Medtr1g095250 10.0kb upstream 10.0kb upstream 10000 false chr1: 42878235-42888234 Medicago truncatula
Medtr1g095250 10.0kb downstream 10.0kb downstream 19180 true chr1: 42859055-42878234 Medicago truncatula
Medtr1g095250 10.0kb downstream 10.0kb downstream 10000 false chr1: 42859055-42869054 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041230 5273 Angiosperm View MSA
122305453 5265 Fabidae View MSA
124061876 5270 Rosid View MSA
123747909 5271 Pentapetalae View MSA
122787011 5272 Eudicot View MSA
121346403 5274 Embryophyte View MSA
123428194 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.123     High Low
cufflinks 22.291     High  
cufflinks 18.681     High  
cufflinks 34.548     High High
cufflinks 19.473     High  
cufflinks 13.348     High Low
cufflinks 24.86     High  
cufflinks 19.974     High  
cufflinks 22.375     High  

0 Strain