Gene : Medtr1g088885 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR32370:SF30 - BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 Description:  phototropic-responsive NPH3 family protein
Genomic Order:  4913 Name:  ? Medtr1g088885
Secondary Identifier:  ? PAC:31092858
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g088885 0.5kb upstream 0.5kb upstream 4954 true chr1: 39820460-39825413 Medicago truncatula
Medtr1g088885 0.5kb upstream 0.5kb upstream 500 false chr1: 39820460-39820959 Medicago truncatula
Medtr1g088885 0.5kb downstream 0.5kb downstream 4954 true chr1: 39820960-39825913 Medicago truncatula
Medtr1g088885 0.5kb downstream 0.5kb downstream 500 false chr1: 39825414-39825913 Medicago truncatula
Medtr1g088885 1.0kb upstream 1.0kb upstream 5454 true chr1: 39819960-39825413 Medicago truncatula
Medtr1g088885 1.0kb upstream 1.0kb upstream 1000 false chr1: 39819960-39820959 Medicago truncatula
Medtr1g088885 1.0kb downstream 1.0kb downstream 5454 true chr1: 39820960-39826413 Medicago truncatula
Medtr1g088885 1.0kb downstream 1.0kb downstream 1000 false chr1: 39825414-39826413 Medicago truncatula
Medtr1g088885 2.0kb upstream 2.0kb upstream 6454 true chr1: 39818960-39825413 Medicago truncatula
Medtr1g088885 2.0kb upstream 2.0kb upstream 2000 false chr1: 39818960-39820959 Medicago truncatula
Medtr1g088885 2.0kb downstream 2.0kb downstream 6454 true chr1: 39820960-39827413 Medicago truncatula
Medtr1g088885 2.0kb downstream 2.0kb downstream 2000 false chr1: 39825414-39827413 Medicago truncatula
Medtr1g088885 5.0kb upstream 5.0kb upstream 9454 true chr1: 39815960-39825413 Medicago truncatula
Medtr1g088885 5.0kb upstream 5.0kb upstream 5000 false chr1: 39815960-39820959 Medicago truncatula
Medtr1g088885 5.0kb downstream 5.0kb downstream 9454 true chr1: 39820960-39830413 Medicago truncatula
Medtr1g088885 5.0kb downstream 5.0kb downstream 5000 false chr1: 39825414-39830413 Medicago truncatula
Medtr1g088885 10.0kb upstream 10.0kb upstream 14454 true chr1: 39810960-39825413 Medicago truncatula
Medtr1g088885 10.0kb upstream 10.0kb upstream 10000 false chr1: 39810960-39820959 Medicago truncatula
Medtr1g088885 10.0kb downstream 10.0kb downstream 14454 true chr1: 39820960-39835413 Medicago truncatula
Medtr1g088885 10.0kb downstream 10.0kb downstream 10000 false chr1: 39825414-39835413 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308207 5265 Fabidae View MSA
124062194 5270 Rosid View MSA
123742261 5271 Pentapetalae View MSA
122789969 5272 Eudicot View MSA
122042362 5273 Angiosperm View MSA
121350656 5274 Embryophyte View MSA
123381839 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.009     Low Low
cufflinks 0.453        
cufflinks 0.304        
cufflinks 0.124        
cufflinks 0.379        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.319        
cufflinks 0.247        
cufflinks 0.402        

0 Strain