Gene : Medtr1g090110 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR12856 - TRANSCRIPTION INITIATION FACTOR IIH-RELATED Description:  TFIIH basal transcription factor complex subunit, putative
Genomic Order:  4985 Name:  ? Medtr1g090110
Secondary Identifier:  ? PAC:31092803
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g090110 0.5kb upstream 0.5kb upstream 12811 true chr1: 40346004-40358814 Medicago truncatula
Medtr1g090110 0.5kb upstream 0.5kb upstream 500 false chr1: 40358315-40358814 Medicago truncatula
Medtr1g090110 0.5kb downstream 0.5kb downstream 12811 true chr1: 40345504-40358314 Medicago truncatula
Medtr1g090110 0.5kb downstream 0.5kb downstream 500 false chr1: 40345504-40346003 Medicago truncatula
Medtr1g090110 1.0kb upstream 1.0kb upstream 13311 true chr1: 40346004-40359314 Medicago truncatula
Medtr1g090110 1.0kb upstream 1.0kb upstream 1000 false chr1: 40358315-40359314 Medicago truncatula
Medtr1g090110 1.0kb downstream 1.0kb downstream 13311 true chr1: 40345004-40358314 Medicago truncatula
Medtr1g090110 1.0kb downstream 1.0kb downstream 1000 false chr1: 40345004-40346003 Medicago truncatula
Medtr1g090110 2.0kb upstream 2.0kb upstream 14311 true chr1: 40346004-40360314 Medicago truncatula
Medtr1g090110 2.0kb upstream 2.0kb upstream 2000 false chr1: 40358315-40360314 Medicago truncatula
Medtr1g090110 2.0kb downstream 2.0kb downstream 14311 true chr1: 40344004-40358314 Medicago truncatula
Medtr1g090110 2.0kb downstream 2.0kb downstream 2000 false chr1: 40344004-40346003 Medicago truncatula
Medtr1g090110 5.0kb upstream 5.0kb upstream 17311 true chr1: 40346004-40363314 Medicago truncatula
Medtr1g090110 5.0kb upstream 5.0kb upstream 5000 false chr1: 40358315-40363314 Medicago truncatula
Medtr1g090110 5.0kb downstream 5.0kb downstream 17311 true chr1: 40341004-40358314 Medicago truncatula
Medtr1g090110 5.0kb downstream 5.0kb downstream 5000 false chr1: 40341004-40346003 Medicago truncatula
Medtr1g090110 10.0kb upstream 10.0kb upstream 22311 true chr1: 40346004-40368314 Medicago truncatula
Medtr1g090110 10.0kb upstream 10.0kb upstream 10000 false chr1: 40358315-40368314 Medicago truncatula
Medtr1g090110 10.0kb downstream 10.0kb downstream 22311 true chr1: 40336004-40358314 Medicago truncatula
Medtr1g090110 10.0kb downstream 10.0kb downstream 10000 false chr1: 40336004-40346003 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299700 5265 Fabidae View MSA
124068692 5270 Rosid View MSA
123738244 5271 Pentapetalae View MSA
122787782 5272 Eudicot View MSA
122047682 5273 Angiosperm View MSA
121347472 5274 Embryophyte View MSA
123425427 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.691        
cufflinks 0.743        
cufflinks 0.713        
cufflinks 0.297       Low
cufflinks 1.001       High
cufflinks 0.362       Low
cufflinks 0.544        
cufflinks 0.628        
cufflinks 0.479        

0 Strain