Gene : Medtr1g090817 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11735:SF14 - TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE-RELATED Description:  O-sialoglycoprotein endopeptidase
Genomic Order:  5068 Name:  ? Medtr1g090817
Secondary Identifier:  ? PAC:31098946
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY0-1587 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g090817 0.5kb upstream 0.5kb upstream 2954 true chr1: 40842227-40845180 Medicago truncatula
Medtr1g090817 0.5kb upstream 0.5kb upstream 500 false chr1: 40844681-40845180 Medicago truncatula
Medtr1g090817 0.5kb downstream 0.5kb downstream 2954 true chr1: 40841727-40844680 Medicago truncatula
Medtr1g090817 0.5kb downstream 0.5kb downstream 500 false chr1: 40841727-40842226 Medicago truncatula
Medtr1g090817 1.0kb upstream 1.0kb upstream 3454 true chr1: 40842227-40845680 Medicago truncatula
Medtr1g090817 1.0kb upstream 1.0kb upstream 1000 false chr1: 40844681-40845680 Medicago truncatula
Medtr1g090817 1.0kb downstream 1.0kb downstream 3454 true chr1: 40841227-40844680 Medicago truncatula
Medtr1g090817 1.0kb downstream 1.0kb downstream 1000 false chr1: 40841227-40842226 Medicago truncatula
Medtr1g090817 2.0kb upstream 2.0kb upstream 4454 true chr1: 40842227-40846680 Medicago truncatula
Medtr1g090817 2.0kb upstream 2.0kb upstream 2000 false chr1: 40844681-40846680 Medicago truncatula
Medtr1g090817 2.0kb downstream 2.0kb downstream 4454 true chr1: 40840227-40844680 Medicago truncatula
Medtr1g090817 2.0kb downstream 2.0kb downstream 2000 false chr1: 40840227-40842226 Medicago truncatula
Medtr1g090817 5.0kb upstream 5.0kb upstream 7454 true chr1: 40842227-40849680 Medicago truncatula
Medtr1g090817 5.0kb upstream 5.0kb upstream 5000 false chr1: 40844681-40849680 Medicago truncatula
Medtr1g090817 5.0kb downstream 5.0kb downstream 7454 true chr1: 40837227-40844680 Medicago truncatula
Medtr1g090817 5.0kb downstream 5.0kb downstream 5000 false chr1: 40837227-40842226 Medicago truncatula
Medtr1g090817 10.0kb upstream 10.0kb upstream 12454 true chr1: 40842227-40854680 Medicago truncatula
Medtr1g090817 10.0kb upstream 10.0kb upstream 10000 false chr1: 40844681-40854680 Medicago truncatula
Medtr1g090817 10.0kb downstream 10.0kb downstream 12454 true chr1: 40832227-40844680 Medicago truncatula
Medtr1g090817 10.0kb downstream 10.0kb downstream 10000 false chr1: 40832227-40842226 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298990 5265 Fabidae View MSA
124066071 5270 Rosid View MSA
123747951 5271 Pentapetalae View MSA
122791458 5272 Eudicot View MSA
122043416 5273 Angiosperm View MSA
121345797 5274 Embryophyte View MSA
123425080 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.85        
cufflinks 3.529        
cufflinks 3.981        
cufflinks 3.528        
cufflinks 7.829       High
cufflinks 0.773       Low
cufflinks 3.423        
cufflinks 3.2        
cufflinks 6.368        

0 Strain