Gene : Medtr1g094200 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11679:SF1 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 33B Description:  vacuolar protein sorting-associated protein
Genomic Order:  5250 Name:  ? Medtr1g094200
Secondary Identifier:  ? PAC:31096287
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g094200 0.5kb upstream 0.5kb upstream 11554 true chr1: 42396541-42408094 Medicago truncatula
Medtr1g094200 0.5kb upstream 0.5kb upstream 500 false chr1: 42396541-42397040 Medicago truncatula
Medtr1g094200 0.5kb downstream 0.5kb downstream 11554 true chr1: 42397041-42408594 Medicago truncatula
Medtr1g094200 0.5kb downstream 0.5kb downstream 500 false chr1: 42408095-42408594 Medicago truncatula
Medtr1g094200 1.0kb upstream 1.0kb upstream 12054 true chr1: 42396041-42408094 Medicago truncatula
Medtr1g094200 1.0kb upstream 1.0kb upstream 1000 false chr1: 42396041-42397040 Medicago truncatula
Medtr1g094200 1.0kb downstream 1.0kb downstream 12054 true chr1: 42397041-42409094 Medicago truncatula
Medtr1g094200 1.0kb downstream 1.0kb downstream 1000 false chr1: 42408095-42409094 Medicago truncatula
Medtr1g094200 2.0kb upstream 2.0kb upstream 13054 true chr1: 42395041-42408094 Medicago truncatula
Medtr1g094200 2.0kb upstream 2.0kb upstream 2000 false chr1: 42395041-42397040 Medicago truncatula
Medtr1g094200 2.0kb downstream 2.0kb downstream 13054 true chr1: 42397041-42410094 Medicago truncatula
Medtr1g094200 2.0kb downstream 2.0kb downstream 2000 false chr1: 42408095-42410094 Medicago truncatula
Medtr1g094200 5.0kb upstream 5.0kb upstream 16054 true chr1: 42392041-42408094 Medicago truncatula
Medtr1g094200 5.0kb upstream 5.0kb upstream 5000 false chr1: 42392041-42397040 Medicago truncatula
Medtr1g094200 5.0kb downstream 5.0kb downstream 16054 true chr1: 42397041-42413094 Medicago truncatula
Medtr1g094200 5.0kb downstream 5.0kb downstream 5000 false chr1: 42408095-42413094 Medicago truncatula
Medtr1g094200 10.0kb upstream 10.0kb upstream 21054 true chr1: 42387041-42408094 Medicago truncatula
Medtr1g094200 10.0kb upstream 10.0kb upstream 10000 false chr1: 42387041-42397040 Medicago truncatula
Medtr1g094200 10.0kb downstream 10.0kb downstream 21054 true chr1: 42397041-42418094 Medicago truncatula
Medtr1g094200 10.0kb downstream 10.0kb downstream 10000 false chr1: 42408095-42418094 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303848 5265 Fabidae View MSA
124060687 5270 Rosid View MSA
123752056 5271 Pentapetalae View MSA
122787734 5272 Eudicot View MSA
122044199 5273 Angiosperm View MSA
121343889 5274 Embryophyte View MSA
123428072 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.715        
cufflinks 0.877        
cufflinks 0.772        
cufflinks 0.202       Low
cufflinks 0.896        
cufflinks 0.249       Low
cufflinks 0.537        
cufflinks 0.669        
cufflinks 0.435        

0 Strain