Gene : Medtr2g015890 M. truncatula Mt4.0v1
Defline:  (1 of 5) PTHR12565//PTHR12565:SF82 - STEROL REGULATORY ELEMENT-BINDING PROTEIN Description:  transcription factor
Genomic Order:  714 Name:  ? Medtr2g015890
Secondary Identifier:  ? PAC:31069131
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g015890 0.5kb upstream 0.5kb upstream 2283 true chr2: 4770207-4772489 Medicago truncatula
Medtr2g015890 0.5kb upstream 0.5kb upstream 500 false chr2: 4771990-4772489 Medicago truncatula
Medtr2g015890 0.5kb downstream 0.5kb downstream 2283 true chr2: 4769707-4771989 Medicago truncatula
Medtr2g015890 0.5kb downstream 0.5kb downstream 500 false chr2: 4769707-4770206 Medicago truncatula
Medtr2g015890 1.0kb upstream 1.0kb upstream 2783 true chr2: 4770207-4772989 Medicago truncatula
Medtr2g015890 1.0kb upstream 1.0kb upstream 1000 false chr2: 4771990-4772989 Medicago truncatula
Medtr2g015890 1.0kb downstream 1.0kb downstream 2783 true chr2: 4769207-4771989 Medicago truncatula
Medtr2g015890 1.0kb downstream 1.0kb downstream 1000 false chr2: 4769207-4770206 Medicago truncatula
Medtr2g015890 2.0kb upstream 2.0kb upstream 3783 true chr2: 4770207-4773989 Medicago truncatula
Medtr2g015890 2.0kb upstream 2.0kb upstream 2000 false chr2: 4771990-4773989 Medicago truncatula
Medtr2g015890 2.0kb downstream 2.0kb downstream 3783 true chr2: 4768207-4771989 Medicago truncatula
Medtr2g015890 2.0kb downstream 2.0kb downstream 2000 false chr2: 4768207-4770206 Medicago truncatula
Medtr2g015890 5.0kb upstream 5.0kb upstream 6783 true chr2: 4770207-4776989 Medicago truncatula
Medtr2g015890 5.0kb upstream 5.0kb upstream 5000 false chr2: 4771990-4776989 Medicago truncatula
Medtr2g015890 5.0kb downstream 5.0kb downstream 6783 true chr2: 4765207-4771989 Medicago truncatula
Medtr2g015890 5.0kb downstream 5.0kb downstream 5000 false chr2: 4765207-4770206 Medicago truncatula
Medtr2g015890 10.0kb upstream 10.0kb upstream 11783 true chr2: 4770207-4781989 Medicago truncatula
Medtr2g015890 10.0kb upstream 10.0kb upstream 10000 false chr2: 4771990-4781989 Medicago truncatula
Medtr2g015890 10.0kb downstream 10.0kb downstream 11783 true chr2: 4760207-4771989 Medicago truncatula
Medtr2g015890 10.0kb downstream 10.0kb downstream 10000 false chr2: 4760207-4770206 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122288359 5265 Fabidae View MSA
124028653 5270 Rosid View MSA
123748515 5271 Pentapetalae View MSA
122793981 5272 Eudicot View MSA
122048947 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.167       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low  
cufflinks 0.059     Low  
cufflinks 0.001     Low Low
cufflinks 0.136     Low  
cufflinks 0.313        
cufflinks 0.001     Low Low
cufflinks 0.224        

0 Strain