Gene : Medtr2g016140 M. truncatula Mt4.0v1
Defline:  (1 of 19) KOG4282 - Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain Description:  transcription factor
Genomic Order:  728 Name:  ? Medtr2g016140
Secondary Identifier:  ? PAC:31067580
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g016140 0.5kb upstream 0.5kb upstream 4600 true chr2: 4870933-4875532 Medicago truncatula
Medtr2g016140 0.5kb upstream 0.5kb upstream 500 false chr2: 4875033-4875532 Medicago truncatula
Medtr2g016140 0.5kb downstream 0.5kb downstream 4600 true chr2: 4870433-4875032 Medicago truncatula
Medtr2g016140 0.5kb downstream 0.5kb downstream 500 false chr2: 4870433-4870932 Medicago truncatula
Medtr2g016140 1.0kb upstream 1.0kb upstream 5100 true chr2: 4870933-4876032 Medicago truncatula
Medtr2g016140 1.0kb upstream 1.0kb upstream 1000 false chr2: 4875033-4876032 Medicago truncatula
Medtr2g016140 1.0kb downstream 1.0kb downstream 5100 true chr2: 4869933-4875032 Medicago truncatula
Medtr2g016140 1.0kb downstream 1.0kb downstream 1000 false chr2: 4869933-4870932 Medicago truncatula
Medtr2g016140 2.0kb upstream 2.0kb upstream 6100 true chr2: 4870933-4877032 Medicago truncatula
Medtr2g016140 2.0kb upstream 2.0kb upstream 2000 false chr2: 4875033-4877032 Medicago truncatula
Medtr2g016140 2.0kb downstream 2.0kb downstream 6100 true chr2: 4868933-4875032 Medicago truncatula
Medtr2g016140 2.0kb downstream 2.0kb downstream 2000 false chr2: 4868933-4870932 Medicago truncatula
Medtr2g016140 5.0kb upstream 5.0kb upstream 9100 true chr2: 4870933-4880032 Medicago truncatula
Medtr2g016140 5.0kb upstream 5.0kb upstream 5000 false chr2: 4875033-4880032 Medicago truncatula
Medtr2g016140 5.0kb downstream 5.0kb downstream 9100 true chr2: 4865933-4875032 Medicago truncatula
Medtr2g016140 5.0kb downstream 5.0kb downstream 5000 false chr2: 4865933-4870932 Medicago truncatula
Medtr2g016140 10.0kb upstream 10.0kb upstream 14100 true chr2: 4870933-4885032 Medicago truncatula
Medtr2g016140 10.0kb upstream 10.0kb upstream 10000 false chr2: 4875033-4885032 Medicago truncatula
Medtr2g016140 10.0kb downstream 10.0kb downstream 14100 true chr2: 4860933-4875032 Medicago truncatula
Medtr2g016140 10.0kb downstream 10.0kb downstream 10000 false chr2: 4860933-4870932 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303714 5265 Fabidae View MSA
124073016 5270 Rosid View MSA
123747024 5271 Pentapetalae View MSA
122797594 5272 Eudicot View MSA
122048204 5273 Angiosperm View MSA
121351505 5274 Embryophyte View MSA
123382195 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.27        
cufflinks 2.821        
cufflinks 3.141        
cufflinks 5.108       High
cufflinks 3.183        
cufflinks 2.995        
cufflinks 3.703        
cufflinks 2.738       Low
cufflinks 4.322       High

0 Strain