Gene : Medtr2g013490 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR10920:SF12 - TRNA (CYTIDINE(32)/GUANOSINE(34)-2'-O)-METHYLTRANSFERASE-RELATED Description:  ribosomal RNA large subunit methyltransferase
Genomic Order:  545 Name:  ? Medtr2g013490
Secondary Identifier:  ? PAC:31062797
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6829 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g013490 0.5kb upstream 0.5kb upstream 6437 true chr2: 3632977-3639413 Medicago truncatula
Medtr2g013490 0.5kb upstream 0.5kb upstream 500 false chr2: 3638914-3639413 Medicago truncatula
Medtr2g013490 0.5kb downstream 0.5kb downstream 6437 true chr2: 3632477-3638913 Medicago truncatula
Medtr2g013490 0.5kb downstream 0.5kb downstream 500 false chr2: 3632477-3632976 Medicago truncatula
Medtr2g013490 1.0kb upstream 1.0kb upstream 6937 true chr2: 3632977-3639913 Medicago truncatula
Medtr2g013490 1.0kb upstream 1.0kb upstream 1000 false chr2: 3638914-3639913 Medicago truncatula
Medtr2g013490 1.0kb downstream 1.0kb downstream 6937 true chr2: 3631977-3638913 Medicago truncatula
Medtr2g013490 1.0kb downstream 1.0kb downstream 1000 false chr2: 3631977-3632976 Medicago truncatula
Medtr2g013490 2.0kb upstream 2.0kb upstream 7937 true chr2: 3632977-3640913 Medicago truncatula
Medtr2g013490 2.0kb upstream 2.0kb upstream 2000 false chr2: 3638914-3640913 Medicago truncatula
Medtr2g013490 2.0kb downstream 2.0kb downstream 7937 true chr2: 3630977-3638913 Medicago truncatula
Medtr2g013490 2.0kb downstream 2.0kb downstream 2000 false chr2: 3630977-3632976 Medicago truncatula
Medtr2g013490 5.0kb upstream 5.0kb upstream 10937 true chr2: 3632977-3643913 Medicago truncatula
Medtr2g013490 5.0kb upstream 5.0kb upstream 5000 false chr2: 3638914-3643913 Medicago truncatula
Medtr2g013490 5.0kb downstream 5.0kb downstream 10937 true chr2: 3627977-3638913 Medicago truncatula
Medtr2g013490 5.0kb downstream 5.0kb downstream 5000 false chr2: 3627977-3632976 Medicago truncatula
Medtr2g013490 10.0kb upstream 10.0kb upstream 15937 true chr2: 3632977-3648913 Medicago truncatula
Medtr2g013490 10.0kb upstream 10.0kb upstream 10000 false chr2: 3638914-3648913 Medicago truncatula
Medtr2g013490 10.0kb downstream 10.0kb downstream 15937 true chr2: 3622977-3638913 Medicago truncatula
Medtr2g013490 10.0kb downstream 10.0kb downstream 10000 false chr2: 3622977-3632976 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312091 5265 Fabidae View MSA
124067188 5270 Rosid View MSA
123742065 5271 Pentapetalae View MSA
122791552 5272 Eudicot View MSA
122044785 5273 Angiosperm View MSA
121347520 5274 Embryophyte View MSA
123424894 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.775        
cufflinks 0.661        
cufflinks 0.623        
cufflinks 1.255        
cufflinks 1.224        
cufflinks 0.362       Low
cufflinks 1.293        
cufflinks 0.702        
cufflinks 1.579       High

0 Strain