Gene : Medtr1g484940 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR13683//PTHR13683:SF312 - ASPARTYL PROTEASES Description:  fungal proteinase A, aspartic proteinase superfamily protein
Genomic Order:  4644 Name:  ? Medtr1g484940
Secondary Identifier:  ? PAC:31092875
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g484940 0.5kb upstream 0.5kb upstream 5509 true chr1: 37815775-37821283 Medicago truncatula
Medtr1g484940 0.5kb upstream 0.5kb upstream 500 false chr1: 37815775-37816274 Medicago truncatula
Medtr1g484940 0.5kb downstream 0.5kb downstream 5509 true chr1: 37816275-37821783 Medicago truncatula
Medtr1g484940 0.5kb downstream 0.5kb downstream 500 false chr1: 37821284-37821783 Medicago truncatula
Medtr1g484940 1.0kb upstream 1.0kb upstream 6009 true chr1: 37815275-37821283 Medicago truncatula
Medtr1g484940 1.0kb upstream 1.0kb upstream 1000 false chr1: 37815275-37816274 Medicago truncatula
Medtr1g484940 1.0kb downstream 1.0kb downstream 6009 true chr1: 37816275-37822283 Medicago truncatula
Medtr1g484940 1.0kb downstream 1.0kb downstream 1000 false chr1: 37821284-37822283 Medicago truncatula
Medtr1g484940 2.0kb upstream 2.0kb upstream 7009 true chr1: 37814275-37821283 Medicago truncatula
Medtr1g484940 2.0kb upstream 2.0kb upstream 2000 false chr1: 37814275-37816274 Medicago truncatula
Medtr1g484940 2.0kb downstream 2.0kb downstream 7009 true chr1: 37816275-37823283 Medicago truncatula
Medtr1g484940 2.0kb downstream 2.0kb downstream 2000 false chr1: 37821284-37823283 Medicago truncatula
Medtr1g484940 5.0kb upstream 5.0kb upstream 10009 true chr1: 37811275-37821283 Medicago truncatula
Medtr1g484940 5.0kb upstream 5.0kb upstream 5000 false chr1: 37811275-37816274 Medicago truncatula
Medtr1g484940 5.0kb downstream 5.0kb downstream 10009 true chr1: 37816275-37826283 Medicago truncatula
Medtr1g484940 5.0kb downstream 5.0kb downstream 5000 false chr1: 37821284-37826283 Medicago truncatula
Medtr1g484940 10.0kb upstream 10.0kb upstream 15009 true chr1: 37806275-37821283 Medicago truncatula
Medtr1g484940 10.0kb upstream 10.0kb upstream 10000 false chr1: 37806275-37816274 Medicago truncatula
Medtr1g484940 10.0kb downstream 10.0kb downstream 15009 true chr1: 37816275-37831283 Medicago truncatula
Medtr1g484940 10.0kb downstream 10.0kb downstream 10000 false chr1: 37821284-37831283 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313872 5265 Fabidae View MSA
124071127 5270 Rosid View MSA
123740338 5271 Pentapetalae View MSA
122795387 5272 Eudicot View MSA
122051849 5273 Angiosperm View MSA
121312739 5274 Embryophyte View MSA
123428778 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.259        
cufflinks 4.054        
cufflinks 7.879       High
cufflinks 2.333        
cufflinks 9.275       High
cufflinks 1.608       Low
cufflinks 4.533        
cufflinks 4.843        
cufflinks 5.123        

0 Strain