Gene : Medtr1g114300 M. truncatula Mt4.0v1
Defline:  (1 of 210) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  PPR containing plant-like protein
Genomic Order:  6500 Name:  ? Medtr1g114300
Secondary Identifier:  ? PAC:31098182
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g114300 0.5kb upstream 0.5kb upstream 5502 true chr1: 51583476-51588977 Medicago truncatula
Medtr1g114300 0.5kb upstream 0.5kb upstream 500 false chr1: 51588478-51588977 Medicago truncatula
Medtr1g114300 0.5kb downstream 0.5kb downstream 5502 true chr1: 51582976-51588477 Medicago truncatula
Medtr1g114300 0.5kb downstream 0.5kb downstream 500 false chr1: 51582976-51583475 Medicago truncatula
Medtr1g114300 1.0kb upstream 1.0kb upstream 6002 true chr1: 51583476-51589477 Medicago truncatula
Medtr1g114300 1.0kb upstream 1.0kb upstream 1000 false chr1: 51588478-51589477 Medicago truncatula
Medtr1g114300 1.0kb downstream 1.0kb downstream 6002 true chr1: 51582476-51588477 Medicago truncatula
Medtr1g114300 1.0kb downstream 1.0kb downstream 1000 false chr1: 51582476-51583475 Medicago truncatula
Medtr1g114300 2.0kb upstream 2.0kb upstream 7002 true chr1: 51583476-51590477 Medicago truncatula
Medtr1g114300 2.0kb upstream 2.0kb upstream 2000 false chr1: 51588478-51590477 Medicago truncatula
Medtr1g114300 2.0kb downstream 2.0kb downstream 7002 true chr1: 51581476-51588477 Medicago truncatula
Medtr1g114300 2.0kb downstream 2.0kb downstream 2000 false chr1: 51581476-51583475 Medicago truncatula
Medtr1g114300 5.0kb upstream 5.0kb upstream 10002 true chr1: 51583476-51593477 Medicago truncatula
Medtr1g114300 5.0kb upstream 5.0kb upstream 5000 false chr1: 51588478-51593477 Medicago truncatula
Medtr1g114300 5.0kb downstream 5.0kb downstream 10002 true chr1: 51578476-51588477 Medicago truncatula
Medtr1g114300 5.0kb downstream 5.0kb downstream 5000 false chr1: 51578476-51583475 Medicago truncatula
Medtr1g114300 10.0kb upstream 10.0kb upstream 15002 true chr1: 51583476-51598477 Medicago truncatula
Medtr1g114300 10.0kb upstream 10.0kb upstream 10000 false chr1: 51588478-51598477 Medicago truncatula
Medtr1g114300 10.0kb downstream 10.0kb downstream 15002 true chr1: 51573476-51588477 Medicago truncatula
Medtr1g114300 10.0kb downstream 10.0kb downstream 10000 false chr1: 51573476-51583475 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308338 5265 Fabidae View MSA
124061532 5270 Rosid View MSA
123741129 5271 Pentapetalae View MSA
122786104 5272 Eudicot View MSA
122045308 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121346704 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.783        
cufflinks 7.048        
cufflinks 20.109     High High
cufflinks 1.504        
cufflinks 16.93     High High
cufflinks 1.512        
cufflinks 1.656        
cufflinks 13.441     High  
cufflinks 0.626       Low

0 Strain