Gene : Medtr1g115255 M. truncatula Mt4.0v1
Defline:  (1 of 14) PF01585 - G-patch domain (G-patch) Description:  DExH-box splicing factor-binding site protein
Genomic Order:  6554 Name:  ? Medtr1g115255
Secondary Identifier:  ? PAC:31100353
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g115255 0.5kb upstream 0.5kb upstream 4661 true chr1: 51946580-51951240 Medicago truncatula
Medtr1g115255 0.5kb upstream 0.5kb upstream 500 false chr1: 51946580-51947079 Medicago truncatula
Medtr1g115255 0.5kb downstream 0.5kb downstream 4661 true chr1: 51947080-51951740 Medicago truncatula
Medtr1g115255 0.5kb downstream 0.5kb downstream 500 false chr1: 51951241-51951740 Medicago truncatula
Medtr1g115255 1.0kb upstream 1.0kb upstream 5161 true chr1: 51946080-51951240 Medicago truncatula
Medtr1g115255 1.0kb upstream 1.0kb upstream 1000 false chr1: 51946080-51947079 Medicago truncatula
Medtr1g115255 1.0kb downstream 1.0kb downstream 5161 true chr1: 51947080-51952240 Medicago truncatula
Medtr1g115255 1.0kb downstream 1.0kb downstream 1000 false chr1: 51951241-51952240 Medicago truncatula
Medtr1g115255 2.0kb upstream 2.0kb upstream 6161 true chr1: 51945080-51951240 Medicago truncatula
Medtr1g115255 2.0kb upstream 2.0kb upstream 2000 false chr1: 51945080-51947079 Medicago truncatula
Medtr1g115255 2.0kb downstream 2.0kb downstream 6161 true chr1: 51947080-51953240 Medicago truncatula
Medtr1g115255 2.0kb downstream 2.0kb downstream 2000 false chr1: 51951241-51953240 Medicago truncatula
Medtr1g115255 5.0kb upstream 5.0kb upstream 9161 true chr1: 51942080-51951240 Medicago truncatula
Medtr1g115255 5.0kb upstream 5.0kb upstream 5000 false chr1: 51942080-51947079 Medicago truncatula
Medtr1g115255 5.0kb downstream 5.0kb downstream 9161 true chr1: 51947080-51956240 Medicago truncatula
Medtr1g115255 5.0kb downstream 5.0kb downstream 5000 false chr1: 51951241-51956240 Medicago truncatula
Medtr1g115255 10.0kb upstream 10.0kb upstream 14161 true chr1: 51937080-51951240 Medicago truncatula
Medtr1g115255 10.0kb upstream 10.0kb upstream 10000 false chr1: 51937080-51947079 Medicago truncatula
Medtr1g115255 10.0kb downstream 10.0kb downstream 14161 true chr1: 51947080-51961240 Medicago truncatula
Medtr1g115255 10.0kb downstream 10.0kb downstream 10000 false chr1: 51951241-51961240 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296239 5265 Fabidae View MSA
124065567 5270 Rosid View MSA
123743393 5271 Pentapetalae View MSA
122790143 5272 Eudicot View MSA
122044236 5273 Angiosperm View MSA
121347132 5274 Embryophyte View MSA
123425168 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.812        
cufflinks 1.135        
cufflinks 1.317       High
cufflinks 0.6       Low
cufflinks 1.099        
cufflinks 0.679       Low
cufflinks 1.324       High
cufflinks 1.194        
cufflinks 0.751        

0 Strain