Gene : Medtr1g116500 M. truncatula Mt4.0v1
Defline:  (1 of 2) 2.3.3.13 - 2-isopropylmalate synthase / Isopropylmalate synthetase Description:  2-isopropylmalate synthase
Genomic Order:  6667 Name:  ? Medtr1g116500
Secondary Identifier:  ? PAC:31096452
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula BRANCHED-CHAIN-AA-SYN-PWY Medicago truncatula pathologic  
Mtruncatula LEUSYN-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g116500 0.5kb upstream 0.5kb upstream 8619 true chr1: 52692165-52700783 Medicago truncatula
Medtr1g116500 0.5kb upstream 0.5kb upstream 500 false chr1: 52692165-52692664 Medicago truncatula
Medtr1g116500 0.5kb downstream 0.5kb downstream 8619 true chr1: 52692665-52701283 Medicago truncatula
Medtr1g116500 0.5kb downstream 0.5kb downstream 500 false chr1: 52700784-52701283 Medicago truncatula
Medtr1g116500 1.0kb upstream 1.0kb upstream 9119 true chr1: 52691665-52700783 Medicago truncatula
Medtr1g116500 1.0kb upstream 1.0kb upstream 1000 false chr1: 52691665-52692664 Medicago truncatula
Medtr1g116500 1.0kb downstream 1.0kb downstream 9119 true chr1: 52692665-52701783 Medicago truncatula
Medtr1g116500 1.0kb downstream 1.0kb downstream 1000 false chr1: 52700784-52701783 Medicago truncatula
Medtr1g116500 2.0kb upstream 2.0kb upstream 10119 true chr1: 52690665-52700783 Medicago truncatula
Medtr1g116500 2.0kb upstream 2.0kb upstream 2000 false chr1: 52690665-52692664 Medicago truncatula
Medtr1g116500 2.0kb downstream 2.0kb downstream 10119 true chr1: 52692665-52702783 Medicago truncatula
Medtr1g116500 2.0kb downstream 2.0kb downstream 2000 false chr1: 52700784-52702783 Medicago truncatula
Medtr1g116500 5.0kb upstream 5.0kb upstream 13119 true chr1: 52687665-52700783 Medicago truncatula
Medtr1g116500 5.0kb upstream 5.0kb upstream 5000 false chr1: 52687665-52692664 Medicago truncatula
Medtr1g116500 5.0kb downstream 5.0kb downstream 13119 true chr1: 52692665-52705783 Medicago truncatula
Medtr1g116500 5.0kb downstream 5.0kb downstream 5000 false chr1: 52700784-52705783 Medicago truncatula
Medtr1g116500 10.0kb upstream 10.0kb upstream 18119 true chr1: 52682665-52700783 Medicago truncatula
Medtr1g116500 10.0kb upstream 10.0kb upstream 10000 false chr1: 52682665-52692664 Medicago truncatula
Medtr1g116500 10.0kb downstream 10.0kb downstream 18119 true chr1: 52692665-52710783 Medicago truncatula
Medtr1g116500 10.0kb downstream 10.0kb downstream 10000 false chr1: 52700784-52710783 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305643 5265 Fabidae View MSA
124073887 5270 Rosid View MSA
123749835 5271 Pentapetalae View MSA
122795041 5272 Eudicot View MSA
122042075 5273 Angiosperm View MSA
121343846 5274 Embryophyte View MSA
123424493 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.926        
cufflinks 7.736        
cufflinks 7.347        
cufflinks 8.545        
cufflinks 9.844       High
cufflinks 2.8       Low
cufflinks 4.991        
cufflinks 7.832        
cufflinks 7.349        

0 Strain