Gene : Medtr1g116510 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR21433 - TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA Description:  TMPIT-like protein
Genomic Order:  6668 Name:  ? Medtr1g116510
Secondary Identifier:  ? PAC:31093200
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g116510 0.5kb upstream 0.5kb upstream 5743 true chr1: 52707459-52713201 Medicago truncatula
Medtr1g116510 0.5kb upstream 0.5kb upstream 500 false chr1: 52707459-52707958 Medicago truncatula
Medtr1g116510 0.5kb downstream 0.5kb downstream 5743 true chr1: 52707959-52713701 Medicago truncatula
Medtr1g116510 0.5kb downstream 0.5kb downstream 500 false chr1: 52713202-52713701 Medicago truncatula
Medtr1g116510 1.0kb upstream 1.0kb upstream 6243 true chr1: 52706959-52713201 Medicago truncatula
Medtr1g116510 1.0kb upstream 1.0kb upstream 1000 false chr1: 52706959-52707958 Medicago truncatula
Medtr1g116510 1.0kb downstream 1.0kb downstream 6243 true chr1: 52707959-52714201 Medicago truncatula
Medtr1g116510 1.0kb downstream 1.0kb downstream 1000 false chr1: 52713202-52714201 Medicago truncatula
Medtr1g116510 2.0kb upstream 2.0kb upstream 7243 true chr1: 52705959-52713201 Medicago truncatula
Medtr1g116510 2.0kb upstream 2.0kb upstream 2000 false chr1: 52705959-52707958 Medicago truncatula
Medtr1g116510 2.0kb downstream 2.0kb downstream 7243 true chr1: 52707959-52715201 Medicago truncatula
Medtr1g116510 2.0kb downstream 2.0kb downstream 2000 false chr1: 52713202-52715201 Medicago truncatula
Medtr1g116510 5.0kb upstream 5.0kb upstream 10243 true chr1: 52702959-52713201 Medicago truncatula
Medtr1g116510 5.0kb upstream 5.0kb upstream 5000 false chr1: 52702959-52707958 Medicago truncatula
Medtr1g116510 5.0kb downstream 5.0kb downstream 10243 true chr1: 52707959-52718201 Medicago truncatula
Medtr1g116510 5.0kb downstream 5.0kb downstream 5000 false chr1: 52713202-52718201 Medicago truncatula
Medtr1g116510 10.0kb upstream 10.0kb upstream 15243 true chr1: 52697959-52713201 Medicago truncatula
Medtr1g116510 10.0kb upstream 10.0kb upstream 10000 false chr1: 52697959-52707958 Medicago truncatula
Medtr1g116510 10.0kb downstream 10.0kb downstream 15243 true chr1: 52707959-52723201 Medicago truncatula
Medtr1g116510 10.0kb downstream 10.0kb downstream 10000 false chr1: 52713202-52723201 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305607 5265 Fabidae View MSA
124065114 5270 Rosid View MSA
123747288 5271 Pentapetalae View MSA
122787986 5272 Eudicot View MSA
122046309 5273 Angiosperm View MSA
121351059 5274 Embryophyte View MSA
123427435 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.066       Low
cufflinks 7.421        
cufflinks 6.844        
cufflinks 4.067        
cufflinks 8.452       High
cufflinks 3.506       Low
cufflinks 5.992        
cufflinks 6.297        
cufflinks 4.807        

0 Strain