Gene : Medtr2g047908 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR12965 - VACUOLAR PROTEIN SORTING 54 Description:  vacuolar sorting protein
Genomic Order:  2808 Name:  ? Medtr2g047908
Secondary Identifier:  ? PAC:31064798
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g047908 0.5kb upstream 0.5kb upstream 17506 true chr2: 20992664-21010169 Medicago truncatula
Medtr2g047908 0.5kb upstream 0.5kb upstream 500 false chr2: 21009670-21010169 Medicago truncatula
Medtr2g047908 0.5kb downstream 0.5kb downstream 17506 true chr2: 20992164-21009669 Medicago truncatula
Medtr2g047908 0.5kb downstream 0.5kb downstream 500 false chr2: 20992164-20992663 Medicago truncatula
Medtr2g047908 1.0kb upstream 1.0kb upstream 18006 true chr2: 20992664-21010669 Medicago truncatula
Medtr2g047908 1.0kb upstream 1.0kb upstream 1000 false chr2: 21009670-21010669 Medicago truncatula
Medtr2g047908 1.0kb downstream 1.0kb downstream 18006 true chr2: 20991664-21009669 Medicago truncatula
Medtr2g047908 1.0kb downstream 1.0kb downstream 1000 false chr2: 20991664-20992663 Medicago truncatula
Medtr2g047908 2.0kb upstream 2.0kb upstream 19006 true chr2: 20992664-21011669 Medicago truncatula
Medtr2g047908 2.0kb upstream 2.0kb upstream 2000 false chr2: 21009670-21011669 Medicago truncatula
Medtr2g047908 2.0kb downstream 2.0kb downstream 19006 true chr2: 20990664-21009669 Medicago truncatula
Medtr2g047908 2.0kb downstream 2.0kb downstream 2000 false chr2: 20990664-20992663 Medicago truncatula
Medtr2g047908 5.0kb upstream 5.0kb upstream 22006 true chr2: 20992664-21014669 Medicago truncatula
Medtr2g047908 5.0kb upstream 5.0kb upstream 5000 false chr2: 21009670-21014669 Medicago truncatula
Medtr2g047908 5.0kb downstream 5.0kb downstream 22006 true chr2: 20987664-21009669 Medicago truncatula
Medtr2g047908 5.0kb downstream 5.0kb downstream 5000 false chr2: 20987664-20992663 Medicago truncatula
Medtr2g047908 10.0kb upstream 10.0kb upstream 27006 true chr2: 20992664-21019669 Medicago truncatula
Medtr2g047908 10.0kb upstream 10.0kb upstream 10000 false chr2: 21009670-21019669 Medicago truncatula
Medtr2g047908 10.0kb downstream 10.0kb downstream 27006 true chr2: 20982664-21009669 Medicago truncatula
Medtr2g047908 10.0kb downstream 10.0kb downstream 10000 false chr2: 20982664-20992663 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303827 5265 Fabidae View MSA
124068245 5270 Rosid View MSA
123740237 5271 Pentapetalae View MSA
122788545 5272 Eudicot View MSA
122042289 5273 Angiosperm View MSA
121346645 5274 Embryophyte View MSA
123425367 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.584        
cufflinks 2.427       High
cufflinks 1.735        
cufflinks 0.725       Low
cufflinks 2.726       High
cufflinks 0.633       Low
cufflinks 1.288        
cufflinks 1.556        
cufflinks 1.696        

0 Strain