Gene : Medtr2g049400 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR31375:SF31 - F3F20.10 PROTEIN-RELATED Description:  pectin lyase superfamily protein
Genomic Order:  2886 Name:  ? Medtr2g049400
Secondary Identifier:  ? PAC:31064037
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1081 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g049400 0.5kb upstream 0.5kb upstream 3801 true chr2: 21772316-21776116 Medicago truncatula
Medtr2g049400 0.5kb upstream 0.5kb upstream 500 false chr2: 21772316-21772815 Medicago truncatula
Medtr2g049400 0.5kb downstream 0.5kb downstream 3801 true chr2: 21772816-21776616 Medicago truncatula
Medtr2g049400 0.5kb downstream 0.5kb downstream 500 false chr2: 21776117-21776616 Medicago truncatula
Medtr2g049400 1.0kb upstream 1.0kb upstream 4301 true chr2: 21771816-21776116 Medicago truncatula
Medtr2g049400 1.0kb upstream 1.0kb upstream 1000 false chr2: 21771816-21772815 Medicago truncatula
Medtr2g049400 1.0kb downstream 1.0kb downstream 4301 true chr2: 21772816-21777116 Medicago truncatula
Medtr2g049400 1.0kb downstream 1.0kb downstream 1000 false chr2: 21776117-21777116 Medicago truncatula
Medtr2g049400 2.0kb upstream 2.0kb upstream 5301 true chr2: 21770816-21776116 Medicago truncatula
Medtr2g049400 2.0kb upstream 2.0kb upstream 2000 false chr2: 21770816-21772815 Medicago truncatula
Medtr2g049400 2.0kb downstream 2.0kb downstream 5301 true chr2: 21772816-21778116 Medicago truncatula
Medtr2g049400 2.0kb downstream 2.0kb downstream 2000 false chr2: 21776117-21778116 Medicago truncatula
Medtr2g049400 5.0kb upstream 5.0kb upstream 8301 true chr2: 21767816-21776116 Medicago truncatula
Medtr2g049400 5.0kb upstream 5.0kb upstream 5000 false chr2: 21767816-21772815 Medicago truncatula
Medtr2g049400 5.0kb downstream 5.0kb downstream 8301 true chr2: 21772816-21781116 Medicago truncatula
Medtr2g049400 5.0kb downstream 5.0kb downstream 5000 false chr2: 21776117-21781116 Medicago truncatula
Medtr2g049400 10.0kb upstream 10.0kb upstream 13301 true chr2: 21762816-21776116 Medicago truncatula
Medtr2g049400 10.0kb upstream 10.0kb upstream 10000 false chr2: 21762816-21772815 Medicago truncatula
Medtr2g049400 10.0kb downstream 10.0kb downstream 13301 true chr2: 21772816-21786116 Medicago truncatula
Medtr2g049400 10.0kb downstream 10.0kb downstream 10000 false chr2: 21776117-21786116 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309833 5265 Fabidae View MSA
124074410 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.006     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.13        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.101        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.181        

0 Strain