Gene : Medtr2g049740 M. truncatula Mt4.0v1
Defline:  (1 of 47) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Description:  PPR containing plant-like protein
Genomic Order:  2949 Name:  ? Medtr2g049740
Secondary Identifier:  ? PAC:31068432
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g049740 0.5kb upstream 0.5kb upstream 4550 true chr2: 22338168-22342717 Medicago truncatula
Medtr2g049740 0.5kb upstream 0.5kb upstream 500 false chr2: 22338168-22338667 Medicago truncatula
Medtr2g049740 0.5kb downstream 0.5kb downstream 4550 true chr2: 22338668-22343217 Medicago truncatula
Medtr2g049740 0.5kb downstream 0.5kb downstream 500 false chr2: 22342718-22343217 Medicago truncatula
Medtr2g049740 1.0kb upstream 1.0kb upstream 5050 true chr2: 22337668-22342717 Medicago truncatula
Medtr2g049740 1.0kb upstream 1.0kb upstream 1000 false chr2: 22337668-22338667 Medicago truncatula
Medtr2g049740 1.0kb downstream 1.0kb downstream 5050 true chr2: 22338668-22343717 Medicago truncatula
Medtr2g049740 1.0kb downstream 1.0kb downstream 1000 false chr2: 22342718-22343717 Medicago truncatula
Medtr2g049740 2.0kb upstream 2.0kb upstream 6050 true chr2: 22336668-22342717 Medicago truncatula
Medtr2g049740 2.0kb upstream 2.0kb upstream 2000 false chr2: 22336668-22338667 Medicago truncatula
Medtr2g049740 2.0kb downstream 2.0kb downstream 6050 true chr2: 22338668-22344717 Medicago truncatula
Medtr2g049740 2.0kb downstream 2.0kb downstream 2000 false chr2: 22342718-22344717 Medicago truncatula
Medtr2g049740 5.0kb upstream 5.0kb upstream 9050 true chr2: 22333668-22342717 Medicago truncatula
Medtr2g049740 5.0kb upstream 5.0kb upstream 5000 false chr2: 22333668-22338667 Medicago truncatula
Medtr2g049740 5.0kb downstream 5.0kb downstream 9050 true chr2: 22338668-22347717 Medicago truncatula
Medtr2g049740 5.0kb downstream 5.0kb downstream 5000 false chr2: 22342718-22347717 Medicago truncatula
Medtr2g049740 10.0kb upstream 10.0kb upstream 14050 true chr2: 22328668-22342717 Medicago truncatula
Medtr2g049740 10.0kb upstream 10.0kb upstream 10000 false chr2: 22328668-22338667 Medicago truncatula
Medtr2g049740 10.0kb downstream 10.0kb downstream 14050 true chr2: 22338668-22352717 Medicago truncatula
Medtr2g049740 10.0kb downstream 10.0kb downstream 10000 false chr2: 22342718-22352717 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300768 5265 Fabidae View MSA
124068595 5270 Rosid View MSA
123745749 5271 Pentapetalae View MSA
122788083 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.749        
cufflinks 0.313        
cufflinks 0.627        
cufflinks 0.123       Low
cufflinks 1.017       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.563        
cufflinks 0.425        
cufflinks 0.398        

0 Strain