Gene : Medtr2g035840 M. truncatula Mt4.0v1
Defline:  (1 of 7) PF00122//PF00403//PF12710 - E1-E2 ATPase (E1-E2_ATPase) // Heavy-metal-associated domain (HMA) // haloacid dehalogenase-like hydrolase (HAD) Description:  heavy metal P-type ATPase
Genomic Order:  2105 Name:  ? Medtr2g035840
Secondary Identifier:  ? PAC:31068250
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g035840 0.5kb upstream 0.5kb upstream 6704 true chr2: 15205800-15212503 Medicago truncatula
Medtr2g035840 0.5kb upstream 0.5kb upstream 500 false chr2: 15205800-15206299 Medicago truncatula
Medtr2g035840 0.5kb downstream 0.5kb downstream 6704 true chr2: 15206300-15213003 Medicago truncatula
Medtr2g035840 0.5kb downstream 0.5kb downstream 500 false chr2: 15212504-15213003 Medicago truncatula
Medtr2g035840 1.0kb upstream 1.0kb upstream 7204 true chr2: 15205300-15212503 Medicago truncatula
Medtr2g035840 1.0kb upstream 1.0kb upstream 1000 false chr2: 15205300-15206299 Medicago truncatula
Medtr2g035840 1.0kb downstream 1.0kb downstream 7204 true chr2: 15206300-15213503 Medicago truncatula
Medtr2g035840 1.0kb downstream 1.0kb downstream 1000 false chr2: 15212504-15213503 Medicago truncatula
Medtr2g035840 2.0kb upstream 2.0kb upstream 8204 true chr2: 15204300-15212503 Medicago truncatula
Medtr2g035840 2.0kb upstream 2.0kb upstream 2000 false chr2: 15204300-15206299 Medicago truncatula
Medtr2g035840 2.0kb downstream 2.0kb downstream 8204 true chr2: 15206300-15214503 Medicago truncatula
Medtr2g035840 2.0kb downstream 2.0kb downstream 2000 false chr2: 15212504-15214503 Medicago truncatula
Medtr2g035840 5.0kb upstream 5.0kb upstream 11204 true chr2: 15201300-15212503 Medicago truncatula
Medtr2g035840 5.0kb upstream 5.0kb upstream 5000 false chr2: 15201300-15206299 Medicago truncatula
Medtr2g035840 5.0kb downstream 5.0kb downstream 11204 true chr2: 15206300-15217503 Medicago truncatula
Medtr2g035840 5.0kb downstream 5.0kb downstream 5000 false chr2: 15212504-15217503 Medicago truncatula
Medtr2g035840 10.0kb upstream 10.0kb upstream 16204 true chr2: 15196300-15212503 Medicago truncatula
Medtr2g035840 10.0kb upstream 10.0kb upstream 10000 false chr2: 15196300-15206299 Medicago truncatula
Medtr2g035840 10.0kb downstream 10.0kb downstream 16204 true chr2: 15206300-15222503 Medicago truncatula
Medtr2g035840 10.0kb downstream 10.0kb downstream 10000 false chr2: 15212504-15222503 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311207 5265 Fabidae View MSA
124069200 5270 Rosid View MSA
123737302 5271 Pentapetalae View MSA
122788336 5272 Eudicot View MSA
122045942 5273 Angiosperm View MSA
121346195 5274 Embryophyte View MSA
123426796 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.805       High
cufflinks 0.734       Low
cufflinks 1.323        
cufflinks 2.133        
cufflinks 0.98        
cufflinks 1.398        
cufflinks 3.023       High
cufflinks 0.95        
cufflinks 3.153       High

0 Strain