Gene : Medtr2g030400 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF02826//PF14833 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain (2-Hacid_dh_C) // NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase (NAD_binding_11) Description:  3-hydroxyisobutyrate dehydrogenase
Genomic Order:  1613 Name:  ? Medtr2g030400
Secondary Identifier:  ? PAC:31062218
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula VALDEG-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g030400 0.5kb upstream 0.5kb upstream 7660 true chr2: 11433380-11441039 Medicago truncatula
Medtr2g030400 0.5kb upstream 0.5kb upstream 500 false chr2: 11440540-11441039 Medicago truncatula
Medtr2g030400 0.5kb downstream 0.5kb downstream 7660 true chr2: 11432880-11440539 Medicago truncatula
Medtr2g030400 0.5kb downstream 0.5kb downstream 500 false chr2: 11432880-11433379 Medicago truncatula
Medtr2g030400 1.0kb upstream 1.0kb upstream 8160 true chr2: 11433380-11441539 Medicago truncatula
Medtr2g030400 1.0kb upstream 1.0kb upstream 1000 false chr2: 11440540-11441539 Medicago truncatula
Medtr2g030400 1.0kb downstream 1.0kb downstream 8160 true chr2: 11432380-11440539 Medicago truncatula
Medtr2g030400 1.0kb downstream 1.0kb downstream 1000 false chr2: 11432380-11433379 Medicago truncatula
Medtr2g030400 2.0kb upstream 2.0kb upstream 9160 true chr2: 11433380-11442539 Medicago truncatula
Medtr2g030400 2.0kb upstream 2.0kb upstream 2000 false chr2: 11440540-11442539 Medicago truncatula
Medtr2g030400 2.0kb downstream 2.0kb downstream 9160 true chr2: 11431380-11440539 Medicago truncatula
Medtr2g030400 2.0kb downstream 2.0kb downstream 2000 false chr2: 11431380-11433379 Medicago truncatula
Medtr2g030400 5.0kb upstream 5.0kb upstream 12160 true chr2: 11433380-11445539 Medicago truncatula
Medtr2g030400 5.0kb upstream 5.0kb upstream 5000 false chr2: 11440540-11445539 Medicago truncatula
Medtr2g030400 5.0kb downstream 5.0kb downstream 12160 true chr2: 11428380-11440539 Medicago truncatula
Medtr2g030400 5.0kb downstream 5.0kb downstream 5000 false chr2: 11428380-11433379 Medicago truncatula
Medtr2g030400 10.0kb upstream 10.0kb upstream 17160 true chr2: 11433380-11450539 Medicago truncatula
Medtr2g030400 10.0kb upstream 10.0kb upstream 10000 false chr2: 11440540-11450539 Medicago truncatula
Medtr2g030400 10.0kb downstream 10.0kb downstream 17160 true chr2: 11423380-11440539 Medicago truncatula
Medtr2g030400 10.0kb downstream 10.0kb downstream 10000 false chr2: 11423380-11433379 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300764 5265 Fabidae View MSA
124062564 5270 Rosid View MSA
123738883 5271 Pentapetalae View MSA
122787575 5272 Eudicot View MSA
122045971 5273 Angiosperm View MSA
121347535 5274 Embryophyte View MSA
123424560 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.75        
cufflinks 0.983        
cufflinks 3.134       High
cufflinks 1.874        
cufflinks 0.724       Low
cufflinks 2.283        
cufflinks 1.734        
cufflinks 2.438        
cufflinks 0.585       Low

0 Strain