Gene : Medtr2g027410 M. truncatula Mt4.0v1
Defline:  (1 of 21) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Description:  phototropic-responsive NPH3 family protein
Genomic Order:  1437 Name:  ? Medtr2g027410
Secondary Identifier:  ? PAC:31066237
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g027410 0.5kb upstream 0.5kb upstream 6206 true chr2: 10011394-10017599 Medicago truncatula
Medtr2g027410 0.5kb upstream 0.5kb upstream 500 false chr2: 10011394-10011893 Medicago truncatula
Medtr2g027410 0.5kb downstream 0.5kb downstream 6206 true chr2: 10011894-10018099 Medicago truncatula
Medtr2g027410 0.5kb downstream 0.5kb downstream 500 false chr2: 10017600-10018099 Medicago truncatula
Medtr2g027410 1.0kb upstream 1.0kb upstream 6706 true chr2: 10010894-10017599 Medicago truncatula
Medtr2g027410 1.0kb upstream 1.0kb upstream 1000 false chr2: 10010894-10011893 Medicago truncatula
Medtr2g027410 1.0kb downstream 1.0kb downstream 6706 true chr2: 10011894-10018599 Medicago truncatula
Medtr2g027410 1.0kb downstream 1.0kb downstream 1000 false chr2: 10017600-10018599 Medicago truncatula
Medtr2g027410 2.0kb upstream 2.0kb upstream 7706 true chr2: 10009894-10017599 Medicago truncatula
Medtr2g027410 2.0kb upstream 2.0kb upstream 2000 false chr2: 10009894-10011893 Medicago truncatula
Medtr2g027410 2.0kb downstream 2.0kb downstream 7706 true chr2: 10011894-10019599 Medicago truncatula
Medtr2g027410 2.0kb downstream 2.0kb downstream 2000 false chr2: 10017600-10019599 Medicago truncatula
Medtr2g027410 5.0kb upstream 5.0kb upstream 10706 true chr2: 10006894-10017599 Medicago truncatula
Medtr2g027410 5.0kb upstream 5.0kb upstream 5000 false chr2: 10006894-10011893 Medicago truncatula
Medtr2g027410 5.0kb downstream 5.0kb downstream 10706 true chr2: 10011894-10022599 Medicago truncatula
Medtr2g027410 5.0kb downstream 5.0kb downstream 5000 false chr2: 10017600-10022599 Medicago truncatula
Medtr2g027410 10.0kb upstream 10.0kb upstream 15706 true chr2: 10001894-10017599 Medicago truncatula
Medtr2g027410 10.0kb upstream 10.0kb upstream 10000 false chr2: 10001894-10011893 Medicago truncatula
Medtr2g027410 10.0kb downstream 10.0kb downstream 15706 true chr2: 10011894-10027599 Medicago truncatula
Medtr2g027410 10.0kb downstream 10.0kb downstream 10000 false chr2: 10017600-10027599 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026454 5273 Angiosperm View MSA
122313072 5265 Fabidae View MSA
124067148 5270 Rosid View MSA
123737998 5271 Pentapetalae View MSA
122789015 5272 Eudicot View MSA
121296339 5274 Embryophyte View MSA
123334520 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.041     Low Low
cufflinks 0.053     Low  
cufflinks 0.134        
cufflinks 0.096        
cufflinks 0.208       High
cufflinks 0.191       High
cufflinks 0.074        
cufflinks 0.075        
cufflinks 0.064     Low  

0 Strain