Gene : Medtr2g086560 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR10183//PTHR10183:SF299 - CALPAIN Description:  calcium-binding EF-hand protein
Genomic Order:  4569 Name:  ? Medtr2g086560
Secondary Identifier:  ? PAC:31069005
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g086560 0.5kb upstream 0.5kb upstream 4951 true chr2: 36391847-36396797 Medicago truncatula
Medtr2g086560 0.5kb upstream 0.5kb upstream 500 false chr2: 36396298-36396797 Medicago truncatula
Medtr2g086560 0.5kb downstream 0.5kb downstream 4951 true chr2: 36391347-36396297 Medicago truncatula
Medtr2g086560 0.5kb downstream 0.5kb downstream 500 false chr2: 36391347-36391846 Medicago truncatula
Medtr2g086560 1.0kb upstream 1.0kb upstream 5451 true chr2: 36391847-36397297 Medicago truncatula
Medtr2g086560 1.0kb upstream 1.0kb upstream 1000 false chr2: 36396298-36397297 Medicago truncatula
Medtr2g086560 1.0kb downstream 1.0kb downstream 5451 true chr2: 36390847-36396297 Medicago truncatula
Medtr2g086560 1.0kb downstream 1.0kb downstream 1000 false chr2: 36390847-36391846 Medicago truncatula
Medtr2g086560 2.0kb upstream 2.0kb upstream 6451 true chr2: 36391847-36398297 Medicago truncatula
Medtr2g086560 2.0kb upstream 2.0kb upstream 2000 false chr2: 36396298-36398297 Medicago truncatula
Medtr2g086560 2.0kb downstream 2.0kb downstream 6451 true chr2: 36389847-36396297 Medicago truncatula
Medtr2g086560 2.0kb downstream 2.0kb downstream 2000 false chr2: 36389847-36391846 Medicago truncatula
Medtr2g086560 5.0kb upstream 5.0kb upstream 9451 true chr2: 36391847-36401297 Medicago truncatula
Medtr2g086560 5.0kb upstream 5.0kb upstream 5000 false chr2: 36396298-36401297 Medicago truncatula
Medtr2g086560 5.0kb downstream 5.0kb downstream 9451 true chr2: 36386847-36396297 Medicago truncatula
Medtr2g086560 5.0kb downstream 5.0kb downstream 5000 false chr2: 36386847-36391846 Medicago truncatula
Medtr2g086560 10.0kb upstream 10.0kb upstream 14451 true chr2: 36391847-36406297 Medicago truncatula
Medtr2g086560 10.0kb upstream 10.0kb upstream 10000 false chr2: 36396298-36406297 Medicago truncatula
Medtr2g086560 10.0kb downstream 10.0kb downstream 14451 true chr2: 36381847-36396297 Medicago truncatula
Medtr2g086560 10.0kb downstream 10.0kb downstream 10000 false chr2: 36381847-36391846 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304275 5265 Fabidae View MSA
124064338 5270 Rosid View MSA
123744145 5271 Pentapetalae View MSA
122790435 5272 Eudicot View MSA
122044402 5273 Angiosperm View MSA
121345695 5274 Embryophyte View MSA
123427497 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.719     High High
cufflinks 5.239       Low
cufflinks 10.851     High  
cufflinks 10.462     High  
cufflinks 4.614       Low
cufflinks 19.219     High  
cufflinks 29.235     High High
cufflinks 7.458        
cufflinks 28.618     High High

0 Strain