Gene : Medtr2g087560 M. truncatula Mt4.0v1
Defline:  (1 of 7) PTHR12220 - 50S/60S RIBOSOMAL PROTEIN L16 Description:  50S ribosomal protein L16
Genomic Order:  4635 Name:  ? Medtr2g087560
Secondary Identifier:  ? PAC:31066347
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g087560 0.5kb upstream 0.5kb upstream 754 true chr2: 36840901-36841654 Medicago truncatula
Medtr2g087560 0.5kb upstream 0.5kb upstream 500 false chr2: 36841155-36841654 Medicago truncatula
Medtr2g087560 0.5kb downstream 0.5kb downstream 754 true chr2: 36840401-36841154 Medicago truncatula
Medtr2g087560 0.5kb downstream 0.5kb downstream 500 false chr2: 36840401-36840900 Medicago truncatula
Medtr2g087560 1.0kb upstream 1.0kb upstream 1254 true chr2: 36840901-36842154 Medicago truncatula
Medtr2g087560 1.0kb upstream 1.0kb upstream 1000 false chr2: 36841155-36842154 Medicago truncatula
Medtr2g087560 1.0kb downstream 1.0kb downstream 1254 true chr2: 36839901-36841154 Medicago truncatula
Medtr2g087560 1.0kb downstream 1.0kb downstream 1000 false chr2: 36839901-36840900 Medicago truncatula
Medtr2g087560 2.0kb upstream 2.0kb upstream 2254 true chr2: 36840901-36843154 Medicago truncatula
Medtr2g087560 2.0kb upstream 2.0kb upstream 2000 false chr2: 36841155-36843154 Medicago truncatula
Medtr2g087560 2.0kb downstream 2.0kb downstream 2254 true chr2: 36838901-36841154 Medicago truncatula
Medtr2g087560 2.0kb downstream 2.0kb downstream 2000 false chr2: 36838901-36840900 Medicago truncatula
Medtr2g087560 5.0kb upstream 5.0kb upstream 5254 true chr2: 36840901-36846154 Medicago truncatula
Medtr2g087560 5.0kb upstream 5.0kb upstream 5000 false chr2: 36841155-36846154 Medicago truncatula
Medtr2g087560 5.0kb downstream 5.0kb downstream 5254 true chr2: 36835901-36841154 Medicago truncatula
Medtr2g087560 5.0kb downstream 5.0kb downstream 5000 false chr2: 36835901-36840900 Medicago truncatula
Medtr2g087560 10.0kb upstream 10.0kb upstream 10254 true chr2: 36840901-36851154 Medicago truncatula
Medtr2g087560 10.0kb upstream 10.0kb upstream 10000 false chr2: 36841155-36851154 Medicago truncatula
Medtr2g087560 10.0kb downstream 10.0kb downstream 10254 true chr2: 36830901-36841154 Medicago truncatula
Medtr2g087560 10.0kb downstream 10.0kb downstream 10000 false chr2: 36830901-36840900 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122258519 5265 Fabidae Singleton cluster - no MSA
124050189 5270 Rosid View MSA
123748871 5271 Pentapetalae View MSA
122796002 5272 Eudicot View MSA
122041743 5273 Angiosperm View MSA
123429161 5275 Viridiplantae View MSA
121350825 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.132       Low
cufflinks 0.437        
cufflinks 0.774        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.328        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.797        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain