Gene : Medtr2g089510 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR10134:SF5 - CYTOCHROME B6-F COMPLEX IRON-SULFUR SUBUNIT, CHLOROPLASTIC Description:  cytochrome b6-F complex iron-sulfur subunit
Genomic Order:  4767 Name:  ? Medtr2g089510
Secondary Identifier:  ? PAC:31065411
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-101 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g089510 0.5kb upstream 0.5kb upstream 3011 true chr2: 37843106-37846116 Medicago truncatula
Medtr2g089510 0.5kb upstream 0.5kb upstream 500 false chr2: 37843106-37843605 Medicago truncatula
Medtr2g089510 0.5kb downstream 0.5kb downstream 3011 true chr2: 37843606-37846616 Medicago truncatula
Medtr2g089510 0.5kb downstream 0.5kb downstream 500 false chr2: 37846117-37846616 Medicago truncatula
Medtr2g089510 1.0kb upstream 1.0kb upstream 3511 true chr2: 37842606-37846116 Medicago truncatula
Medtr2g089510 1.0kb upstream 1.0kb upstream 1000 false chr2: 37842606-37843605 Medicago truncatula
Medtr2g089510 1.0kb downstream 1.0kb downstream 3511 true chr2: 37843606-37847116 Medicago truncatula
Medtr2g089510 1.0kb downstream 1.0kb downstream 1000 false chr2: 37846117-37847116 Medicago truncatula
Medtr2g089510 2.0kb upstream 2.0kb upstream 4511 true chr2: 37841606-37846116 Medicago truncatula
Medtr2g089510 2.0kb upstream 2.0kb upstream 2000 false chr2: 37841606-37843605 Medicago truncatula
Medtr2g089510 2.0kb downstream 2.0kb downstream 4511 true chr2: 37843606-37848116 Medicago truncatula
Medtr2g089510 2.0kb downstream 2.0kb downstream 2000 false chr2: 37846117-37848116 Medicago truncatula
Medtr2g089510 5.0kb upstream 5.0kb upstream 7511 true chr2: 37838606-37846116 Medicago truncatula
Medtr2g089510 5.0kb upstream 5.0kb upstream 5000 false chr2: 37838606-37843605 Medicago truncatula
Medtr2g089510 5.0kb downstream 5.0kb downstream 7511 true chr2: 37843606-37851116 Medicago truncatula
Medtr2g089510 5.0kb downstream 5.0kb downstream 5000 false chr2: 37846117-37851116 Medicago truncatula
Medtr2g089510 10.0kb upstream 10.0kb upstream 12511 true chr2: 37833606-37846116 Medicago truncatula
Medtr2g089510 10.0kb upstream 10.0kb upstream 10000 false chr2: 37833606-37843605 Medicago truncatula
Medtr2g089510 10.0kb downstream 10.0kb downstream 12511 true chr2: 37843606-37856116 Medicago truncatula
Medtr2g089510 10.0kb downstream 10.0kb downstream 10000 false chr2: 37846117-37856116 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301279 5265 Fabidae View MSA
124073060 5270 Rosid View MSA
123737463 5271 Pentapetalae View MSA
122790798 5272 Eudicot View MSA
122045987 5273 Angiosperm View MSA
121343796 5274 Embryophyte View MSA
123424591 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.478       Low
cufflinks 683.853     High High
cufflinks 559.082     High  
cufflinks 9.191     High  
cufflinks 475.736     High  
cufflinks 18.945     High  
cufflinks 3.9        
cufflinks 677.279     High High
cufflinks 3.527        

0 Strain