Gene : Medtr2g070460 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR10543:SF42 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED2, CHLOROPLASTIC-RELATED Description:  9-cis-epoxycarotenoid dioxygenase
Genomic Order:  3726 Name:  ? Medtr2g070460
Secondary Identifier:  ? PAC:31066000
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-695 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g070460 0.5kb upstream 0.5kb upstream 2933 true chr2: 29670860-29673792 Medicago truncatula
Medtr2g070460 0.5kb upstream 0.5kb upstream 500 false chr2: 29673293-29673792 Medicago truncatula
Medtr2g070460 0.5kb downstream 0.5kb downstream 2933 true chr2: 29670360-29673292 Medicago truncatula
Medtr2g070460 0.5kb downstream 0.5kb downstream 500 false chr2: 29670360-29670859 Medicago truncatula
Medtr2g070460 1.0kb upstream 1.0kb upstream 3433 true chr2: 29670860-29674292 Medicago truncatula
Medtr2g070460 1.0kb upstream 1.0kb upstream 1000 false chr2: 29673293-29674292 Medicago truncatula
Medtr2g070460 1.0kb downstream 1.0kb downstream 3433 true chr2: 29669860-29673292 Medicago truncatula
Medtr2g070460 1.0kb downstream 1.0kb downstream 1000 false chr2: 29669860-29670859 Medicago truncatula
Medtr2g070460 2.0kb upstream 2.0kb upstream 4433 true chr2: 29670860-29675292 Medicago truncatula
Medtr2g070460 2.0kb upstream 2.0kb upstream 2000 false chr2: 29673293-29675292 Medicago truncatula
Medtr2g070460 2.0kb downstream 2.0kb downstream 4433 true chr2: 29668860-29673292 Medicago truncatula
Medtr2g070460 2.0kb downstream 2.0kb downstream 2000 false chr2: 29668860-29670859 Medicago truncatula
Medtr2g070460 5.0kb upstream 5.0kb upstream 7433 true chr2: 29670860-29678292 Medicago truncatula
Medtr2g070460 5.0kb upstream 5.0kb upstream 5000 false chr2: 29673293-29678292 Medicago truncatula
Medtr2g070460 5.0kb downstream 5.0kb downstream 7433 true chr2: 29665860-29673292 Medicago truncatula
Medtr2g070460 5.0kb downstream 5.0kb downstream 5000 false chr2: 29665860-29670859 Medicago truncatula
Medtr2g070460 10.0kb upstream 10.0kb upstream 12433 true chr2: 29670860-29683292 Medicago truncatula
Medtr2g070460 10.0kb upstream 10.0kb upstream 10000 false chr2: 29673293-29683292 Medicago truncatula
Medtr2g070460 10.0kb downstream 10.0kb downstream 12433 true chr2: 29660860-29673292 Medicago truncatula
Medtr2g070460 10.0kb downstream 10.0kb downstream 10000 false chr2: 29660860-29670859 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310479 5265 Fabidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.655        
cufflinks 1.183       Low
cufflinks 6.329       High
cufflinks 0.923       Low
cufflinks 1.338        
cufflinks 3.506        
cufflinks 3.639        
cufflinks 1.76        
cufflinks 7.769       High

0 Strain