Gene : Medtr3g005430 M. truncatula Mt4.0v1
Defline:  (1 of 6) PTHR11831//PTHR11831:SF13 - 30S 40S RIBOSOMAL PROTEIN Description:  40S ribosomal S9-like protein
Genomic Order:  26 Name:  ? Medtr3g005430
Secondary Identifier:  ? PAC:31056330
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g005430 0.5kb upstream 0.5kb upstream 2477 true chr3: 200275-202751 Medicago truncatula
Medtr3g005430 0.5kb upstream 0.5kb upstream 500 false chr3: 200275-200774 Medicago truncatula
Medtr3g005430 0.5kb downstream 0.5kb downstream 2477 true chr3: 200775-203251 Medicago truncatula
Medtr3g005430 0.5kb downstream 0.5kb downstream 500 false chr3: 202752-203251 Medicago truncatula
Medtr3g005430 1.0kb upstream 1.0kb upstream 2977 true chr3: 199775-202751 Medicago truncatula
Medtr3g005430 1.0kb upstream 1.0kb upstream 1000 false chr3: 199775-200774 Medicago truncatula
Medtr3g005430 1.0kb downstream 1.0kb downstream 2977 true chr3: 200775-203751 Medicago truncatula
Medtr3g005430 1.0kb downstream 1.0kb downstream 1000 false chr3: 202752-203751 Medicago truncatula
Medtr3g005430 2.0kb upstream 2.0kb upstream 3977 true chr3: 198775-202751 Medicago truncatula
Medtr3g005430 2.0kb upstream 2.0kb upstream 2000 false chr3: 198775-200774 Medicago truncatula
Medtr3g005430 2.0kb downstream 2.0kb downstream 3977 true chr3: 200775-204751 Medicago truncatula
Medtr3g005430 2.0kb downstream 2.0kb downstream 2000 false chr3: 202752-204751 Medicago truncatula
Medtr3g005430 5.0kb upstream 5.0kb upstream 6977 true chr3: 195775-202751 Medicago truncatula
Medtr3g005430 5.0kb upstream 5.0kb upstream 5000 false chr3: 195775-200774 Medicago truncatula
Medtr3g005430 5.0kb downstream 5.0kb downstream 6977 true chr3: 200775-207751 Medicago truncatula
Medtr3g005430 5.0kb downstream 5.0kb downstream 5000 false chr3: 202752-207751 Medicago truncatula
Medtr3g005430 10.0kb upstream 10.0kb upstream 11977 true chr3: 190775-202751 Medicago truncatula
Medtr3g005430 10.0kb upstream 10.0kb upstream 10000 false chr3: 190775-200774 Medicago truncatula
Medtr3g005430 10.0kb downstream 10.0kb downstream 11977 true chr3: 200775-212751 Medicago truncatula
Medtr3g005430 10.0kb downstream 10.0kb downstream 10000 false chr3: 202752-212751 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301717 5265 Fabidae View MSA
124071399 5270 Rosid View MSA
123748066 5271 Pentapetalae View MSA
122790013 5272 Eudicot View MSA
122042868 5273 Angiosperm View MSA
121345250 5274 Embryophyte View MSA
123426931 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.177     High Low
cufflinks 18.45     High  
cufflinks 15.082     High  
cufflinks 92.826     High High
cufflinks 26.55     High  
cufflinks 33.359     High  
cufflinks 38.096     High  
cufflinks 18.546     High  
cufflinks 54.262     High High

0 Strain