Gene : Medtr2g435640 M. truncatula Mt4.0v1
Defline:  (1 of 93) 3.2.1.15 - Polygalacturonase / Pectinase Description:  polygalacturonase
Genomic Order:  1918 Name:  ? Medtr2g435640
Secondary Identifier:  ? PAC:31065000
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1081 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g435640 0.5kb upstream 0.5kb upstream 5432 true chr2: 13791435-13796866 Medicago truncatula
Medtr2g435640 0.5kb upstream 0.5kb upstream 500 false chr2: 13796367-13796866 Medicago truncatula
Medtr2g435640 0.5kb downstream 0.5kb downstream 5432 true chr2: 13790935-13796366 Medicago truncatula
Medtr2g435640 0.5kb downstream 0.5kb downstream 500 false chr2: 13790935-13791434 Medicago truncatula
Medtr2g435640 1.0kb upstream 1.0kb upstream 5932 true chr2: 13791435-13797366 Medicago truncatula
Medtr2g435640 1.0kb upstream 1.0kb upstream 1000 false chr2: 13796367-13797366 Medicago truncatula
Medtr2g435640 1.0kb downstream 1.0kb downstream 5932 true chr2: 13790435-13796366 Medicago truncatula
Medtr2g435640 1.0kb downstream 1.0kb downstream 1000 false chr2: 13790435-13791434 Medicago truncatula
Medtr2g435640 2.0kb upstream 2.0kb upstream 6932 true chr2: 13791435-13798366 Medicago truncatula
Medtr2g435640 2.0kb upstream 2.0kb upstream 2000 false chr2: 13796367-13798366 Medicago truncatula
Medtr2g435640 2.0kb downstream 2.0kb downstream 6932 true chr2: 13789435-13796366 Medicago truncatula
Medtr2g435640 2.0kb downstream 2.0kb downstream 2000 false chr2: 13789435-13791434 Medicago truncatula
Medtr2g435640 5.0kb upstream 5.0kb upstream 9932 true chr2: 13791435-13801366 Medicago truncatula
Medtr2g435640 5.0kb upstream 5.0kb upstream 5000 false chr2: 13796367-13801366 Medicago truncatula
Medtr2g435640 5.0kb downstream 5.0kb downstream 9932 true chr2: 13786435-13796366 Medicago truncatula
Medtr2g435640 5.0kb downstream 5.0kb downstream 5000 false chr2: 13786435-13791434 Medicago truncatula
Medtr2g435640 10.0kb upstream 10.0kb upstream 14932 true chr2: 13791435-13806366 Medicago truncatula
Medtr2g435640 10.0kb upstream 10.0kb upstream 10000 false chr2: 13796367-13806366 Medicago truncatula
Medtr2g435640 10.0kb downstream 10.0kb downstream 14932 true chr2: 13781435-13796366 Medicago truncatula
Medtr2g435640 10.0kb downstream 10.0kb downstream 10000 false chr2: 13781435-13791434 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310493 5265 Fabidae View MSA
124071236 5270 Rosid View MSA
123746324 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain