Gene : Medtr2g100500 M. truncatula Mt4.0v1
Defline:  (1 of 2) 2.1.1.190 - 23S rRNA (uracil(1939)-C(5))-methyltransferase / RNA uridine methyltransferase A Description:  23S rRNA (uracil-5)-methyltransferase RumA
Genomic Order:  5500 Name:  ? Medtr2g100500
Secondary Identifier:  ? PAC:31062550
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g100500 0.5kb upstream 0.5kb upstream 7286 true chr2: 43193800-43201085 Medicago truncatula
Medtr2g100500 0.5kb upstream 0.5kb upstream 500 false chr2: 43200586-43201085 Medicago truncatula
Medtr2g100500 0.5kb downstream 0.5kb downstream 7286 true chr2: 43193300-43200585 Medicago truncatula
Medtr2g100500 0.5kb downstream 0.5kb downstream 500 false chr2: 43193300-43193799 Medicago truncatula
Medtr2g100500 1.0kb upstream 1.0kb upstream 7786 true chr2: 43193800-43201585 Medicago truncatula
Medtr2g100500 1.0kb upstream 1.0kb upstream 1000 false chr2: 43200586-43201585 Medicago truncatula
Medtr2g100500 1.0kb downstream 1.0kb downstream 7786 true chr2: 43192800-43200585 Medicago truncatula
Medtr2g100500 1.0kb downstream 1.0kb downstream 1000 false chr2: 43192800-43193799 Medicago truncatula
Medtr2g100500 2.0kb upstream 2.0kb upstream 8786 true chr2: 43193800-43202585 Medicago truncatula
Medtr2g100500 2.0kb upstream 2.0kb upstream 2000 false chr2: 43200586-43202585 Medicago truncatula
Medtr2g100500 2.0kb downstream 2.0kb downstream 8786 true chr2: 43191800-43200585 Medicago truncatula
Medtr2g100500 2.0kb downstream 2.0kb downstream 2000 false chr2: 43191800-43193799 Medicago truncatula
Medtr2g100500 5.0kb upstream 5.0kb upstream 11786 true chr2: 43193800-43205585 Medicago truncatula
Medtr2g100500 5.0kb upstream 5.0kb upstream 5000 false chr2: 43200586-43205585 Medicago truncatula
Medtr2g100500 5.0kb downstream 5.0kb downstream 11786 true chr2: 43188800-43200585 Medicago truncatula
Medtr2g100500 5.0kb downstream 5.0kb downstream 5000 false chr2: 43188800-43193799 Medicago truncatula
Medtr2g100500 10.0kb upstream 10.0kb upstream 16786 true chr2: 43193800-43210585 Medicago truncatula
Medtr2g100500 10.0kb upstream 10.0kb upstream 10000 false chr2: 43200586-43210585 Medicago truncatula
Medtr2g100500 10.0kb downstream 10.0kb downstream 16786 true chr2: 43183800-43200585 Medicago truncatula
Medtr2g100500 10.0kb downstream 10.0kb downstream 10000 false chr2: 43183800-43193799 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305203 5265 Fabidae View MSA
124060880 5270 Rosid View MSA
123737477 5271 Pentapetalae View MSA
122788250 5272 Eudicot View MSA
122042152 5273 Angiosperm View MSA
121345091 5274 Embryophyte View MSA
123424748 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.495        
cufflinks 3.919        
cufflinks 3.644        
cufflinks 0.34        
cufflinks 5.61       High
cufflinks 0.155       Low
cufflinks 0.29        
cufflinks 4.117       High
cufflinks 0.356        

0 Strain