Gene : Medtr2g100490 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR12565:SF174 - TRANSCRIPTION FACTOR BHLH87 Description:  basic helix loop helix (BHLH) DNA-binding family protein
Genomic Order:  5499 Name:  ? Medtr2g100490
Secondary Identifier:  ? PAC:31065613
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g100490 0.5kb upstream 0.5kb upstream 2488 true chr2: 43186559-43189046 Medicago truncatula
Medtr2g100490 0.5kb upstream 0.5kb upstream 500 false chr2: 43188547-43189046 Medicago truncatula
Medtr2g100490 0.5kb downstream 0.5kb downstream 2488 true chr2: 43186059-43188546 Medicago truncatula
Medtr2g100490 0.5kb downstream 0.5kb downstream 500 false chr2: 43186059-43186558 Medicago truncatula
Medtr2g100490 1.0kb upstream 1.0kb upstream 2988 true chr2: 43186559-43189546 Medicago truncatula
Medtr2g100490 1.0kb upstream 1.0kb upstream 1000 false chr2: 43188547-43189546 Medicago truncatula
Medtr2g100490 1.0kb downstream 1.0kb downstream 2988 true chr2: 43185559-43188546 Medicago truncatula
Medtr2g100490 1.0kb downstream 1.0kb downstream 1000 false chr2: 43185559-43186558 Medicago truncatula
Medtr2g100490 2.0kb upstream 2.0kb upstream 3988 true chr2: 43186559-43190546 Medicago truncatula
Medtr2g100490 2.0kb upstream 2.0kb upstream 2000 false chr2: 43188547-43190546 Medicago truncatula
Medtr2g100490 2.0kb downstream 2.0kb downstream 3988 true chr2: 43184559-43188546 Medicago truncatula
Medtr2g100490 2.0kb downstream 2.0kb downstream 2000 false chr2: 43184559-43186558 Medicago truncatula
Medtr2g100490 5.0kb upstream 5.0kb upstream 6988 true chr2: 43186559-43193546 Medicago truncatula
Medtr2g100490 5.0kb upstream 5.0kb upstream 5000 false chr2: 43188547-43193546 Medicago truncatula
Medtr2g100490 5.0kb downstream 5.0kb downstream 6988 true chr2: 43181559-43188546 Medicago truncatula
Medtr2g100490 5.0kb downstream 5.0kb downstream 5000 false chr2: 43181559-43186558 Medicago truncatula
Medtr2g100490 10.0kb upstream 10.0kb upstream 11988 true chr2: 43186559-43198546 Medicago truncatula
Medtr2g100490 10.0kb upstream 10.0kb upstream 10000 false chr2: 43188547-43198546 Medicago truncatula
Medtr2g100490 10.0kb downstream 10.0kb downstream 11988 true chr2: 43176559-43188546 Medicago truncatula
Medtr2g100490 10.0kb downstream 10.0kb downstream 10000 false chr2: 43176559-43186558 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041087 5273 Angiosperm View MSA
122312756 5265 Fabidae View MSA
124065230 5270 Rosid View MSA
123741296 5271 Pentapetalae View MSA
122791069 5272 Eudicot View MSA
121351233 5274 Embryophyte View MSA
123382070 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.16       Low
cufflinks 5.968       High
cufflinks 3.35        
cufflinks 0.177        
cufflinks 2.891        
cufflinks 0.64        
cufflinks 0.382        
cufflinks 5.574       High
cufflinks 0.104       Low

0 Strain