Gene : Medtr2g101710 M. truncatula Mt4.0v1
Defline:  (1 of 67) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  PPR containing plant protein
Genomic Order:  5574 Name:  ? Medtr2g101710
Secondary Identifier:  ? PAC:31068887
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g101710 0.5kb upstream 0.5kb upstream 2938 true chr2: 43756533-43759470 Medicago truncatula
Medtr2g101710 0.5kb upstream 0.5kb upstream 500 false chr2: 43758971-43759470 Medicago truncatula
Medtr2g101710 0.5kb downstream 0.5kb downstream 2938 true chr2: 43756033-43758970 Medicago truncatula
Medtr2g101710 0.5kb downstream 0.5kb downstream 500 false chr2: 43756033-43756532 Medicago truncatula
Medtr2g101710 1.0kb upstream 1.0kb upstream 3438 true chr2: 43756533-43759970 Medicago truncatula
Medtr2g101710 1.0kb upstream 1.0kb upstream 1000 false chr2: 43758971-43759970 Medicago truncatula
Medtr2g101710 1.0kb downstream 1.0kb downstream 3438 true chr2: 43755533-43758970 Medicago truncatula
Medtr2g101710 1.0kb downstream 1.0kb downstream 1000 false chr2: 43755533-43756532 Medicago truncatula
Medtr2g101710 2.0kb upstream 2.0kb upstream 4438 true chr2: 43756533-43760970 Medicago truncatula
Medtr2g101710 2.0kb upstream 2.0kb upstream 2000 false chr2: 43758971-43760970 Medicago truncatula
Medtr2g101710 2.0kb downstream 2.0kb downstream 4438 true chr2: 43754533-43758970 Medicago truncatula
Medtr2g101710 2.0kb downstream 2.0kb downstream 2000 false chr2: 43754533-43756532 Medicago truncatula
Medtr2g101710 5.0kb upstream 5.0kb upstream 7438 true chr2: 43756533-43763970 Medicago truncatula
Medtr2g101710 5.0kb upstream 5.0kb upstream 5000 false chr2: 43758971-43763970 Medicago truncatula
Medtr2g101710 5.0kb downstream 5.0kb downstream 7438 true chr2: 43751533-43758970 Medicago truncatula
Medtr2g101710 5.0kb downstream 5.0kb downstream 5000 false chr2: 43751533-43756532 Medicago truncatula
Medtr2g101710 10.0kb upstream 10.0kb upstream 12438 true chr2: 43756533-43768970 Medicago truncatula
Medtr2g101710 10.0kb upstream 10.0kb upstream 10000 false chr2: 43758971-43768970 Medicago truncatula
Medtr2g101710 10.0kb downstream 10.0kb downstream 12438 true chr2: 43746533-43758970 Medicago truncatula
Medtr2g101710 10.0kb downstream 10.0kb downstream 10000 false chr2: 43746533-43756532 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027491 5273 Angiosperm View MSA
122297688 5265 Fabidae View MSA
124070113 5270 Rosid View MSA
123753025 5271 Pentapetalae View MSA
122794671 5272 Eudicot View MSA
121352423 5274 Embryophyte View MSA
123382766 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.716        
cufflinks 0.372        
cufflinks 0.659        
cufflinks 0.143       Low
cufflinks 1.701       High
cufflinks 0.161       Low
cufflinks 0.743        
cufflinks 0.651        
cufflinks 0.927        

0 Strain