Gene : Medtr3g029580 M. truncatula Mt4.0v1
Defline:  (1 of 243) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Description:  RNA recognition motif, a.k.a. RRM, RBD protein
Genomic Order:  1099 Name:  ? Medtr3g029580
Secondary Identifier:  ? PAC:31055735
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g029580 0.5kb upstream 0.5kb upstream 2191 true chr3: 9308268-9310458 Medicago truncatula
Medtr3g029580 0.5kb upstream 0.5kb upstream 500 false chr3: 9308268-9308767 Medicago truncatula
Medtr3g029580 0.5kb downstream 0.5kb downstream 2191 true chr3: 9308768-9310958 Medicago truncatula
Medtr3g029580 0.5kb downstream 0.5kb downstream 500 false chr3: 9310459-9310958 Medicago truncatula
Medtr3g029580 1.0kb upstream 1.0kb upstream 2691 true chr3: 9307768-9310458 Medicago truncatula
Medtr3g029580 1.0kb upstream 1.0kb upstream 1000 false chr3: 9307768-9308767 Medicago truncatula
Medtr3g029580 1.0kb downstream 1.0kb downstream 2691 true chr3: 9308768-9311458 Medicago truncatula
Medtr3g029580 1.0kb downstream 1.0kb downstream 1000 false chr3: 9310459-9311458 Medicago truncatula
Medtr3g029580 2.0kb upstream 2.0kb upstream 3691 true chr3: 9306768-9310458 Medicago truncatula
Medtr3g029580 2.0kb upstream 2.0kb upstream 2000 false chr3: 9306768-9308767 Medicago truncatula
Medtr3g029580 2.0kb downstream 2.0kb downstream 3691 true chr3: 9308768-9312458 Medicago truncatula
Medtr3g029580 2.0kb downstream 2.0kb downstream 2000 false chr3: 9310459-9312458 Medicago truncatula
Medtr3g029580 5.0kb upstream 5.0kb upstream 6691 true chr3: 9303768-9310458 Medicago truncatula
Medtr3g029580 5.0kb upstream 5.0kb upstream 5000 false chr3: 9303768-9308767 Medicago truncatula
Medtr3g029580 5.0kb downstream 5.0kb downstream 6691 true chr3: 9308768-9315458 Medicago truncatula
Medtr3g029580 5.0kb downstream 5.0kb downstream 5000 false chr3: 9310459-9315458 Medicago truncatula
Medtr3g029580 10.0kb upstream 10.0kb upstream 11691 true chr3: 9298768-9310458 Medicago truncatula
Medtr3g029580 10.0kb upstream 10.0kb upstream 10000 false chr3: 9298768-9308767 Medicago truncatula
Medtr3g029580 10.0kb downstream 10.0kb downstream 11691 true chr3: 9308768-9320458 Medicago truncatula
Medtr3g029580 10.0kb downstream 10.0kb downstream 10000 false chr3: 9310459-9320458 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309547 5265 Fabidae View MSA
124069312 5270 Rosid View MSA
123753292 5271 Pentapetalae View MSA
122796166 5272 Eudicot View MSA
122047965 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121310823 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.442       Low
cufflinks 1.289        
cufflinks 1.226        
cufflinks 0.438       Low
cufflinks 1.643       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.748        
cufflinks 1.079        
cufflinks 0.528        

0 Strain